RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 HMBSP08397 361 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 PLEKP08567 350 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-225ENST00000556798 NCAM1P13591 858 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 TNFAIP3P21580 790 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 NSFP46459 744 aaKnown RBP18.29■□□□□ 0.52
SHMT2-225ENST00000556798 SNX16P57768 344 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 CENPCQ03188 943 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 TNK2Q07912 1038 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 TDRD12Q587J7 1177 aaKnown RBP18.29■□□□□ 0.52
SHMT2-225ENST00000556798 HGSNATQ68CP4 663 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 PHLDB2Q86SQ0 1253 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 DDX42Q86XP3 938 aaKnown RBP eCLIP18.29■□□□□ 0.52
SHMT2-225ENST00000556798 XYLT1Q86Y38 959 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 MSANTD4Q8NCY6 345 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 TTC8Q8TAM2 541 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 SYN2Q92777 582 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-225ENST00000556798 IRF7Q92985 503 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 C18orf8Q96DM3 657 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 NUCKS1Q9H1E3 243 aaKnown RBP18.29■□□□□ 0.52
SHMT2-225ENST00000556798 OLA1Q9NTK5 396 aaKnown RBP18.29■□□□□ 0.52
SHMT2-225ENST00000556798 THG1LQ9NWX6 298 aaKnown RBP18.29■□□□□ 0.52
SHMT2-225ENST00000556798 SH3BP1Q9Y3L3 701 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 SLC12A8A0AV02 714 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 TMCO5BA8MYB1 307 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 GOLGA8SH3BPF8 625 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 MSI1O43347 362 aaKnown RBP18.28■□□□□ 0.52
SHMT2-225ENST00000556798 ARSAP15289 507 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 MMP8P22894 467 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 GABRB2P47870 512 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 IFNAR2P48551 515 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 YWHAZP63104 245 aaKnown RBP18.28■□□□□ 0.52
SHMT2-225ENST00000556798 SLC6A3Q01959 620 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 SIGLEC14Q08ET2 396 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 SYPL2Q5VXT5 272 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 MSANTD2Q6P1R3 559 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 TOGARAM2Q6ZUX3 1019 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 ADAM32Q8TC27 787 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 OSCP1Q8WVF1 389 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 FAM83CQ9BQN1 747 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 EBF3Q9H4W6 596 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 POPDC2Q9HBU9 364 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 HPS4Q9NQG7 708 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 HEBP1Q9NRV9 189 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 DUS2Q9NX74 493 aaKnown RBP18.28■□□□□ 0.52
SHMT2-225ENST00000556798 TAS2R14Q9NYV8 317 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 GTSE1Q9NYZ3 720 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 STRIP2Q9ULQ0 834 aa18.28■□□□□ 0.52
SHMT2-225ENST00000556798 FAM86C2PA6NEL3 165 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 CAPN9O14815 690 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 HSF2BPO75031 334 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 MFAP3LO75121 409 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 TPM1P09493 284 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 ADKP55263 362 aaKnown RBP18.27■□□□□ 0.52
SHMT2-225ENST00000556798 PFKPQ01813 784 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 EFHC1Q5JVL4 640 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 FAM102AQ5T9C2 384 aaPredicted RBP18.27■□□□□ 0.52
SHMT2-225ENST00000556798 TRIM67Q6ZTA4 783 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 SLC26A9Q7LBE3 791 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 TAC4Q86UU9 113 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 DNAAF5Q86Y56 855 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 DEFB106AQ8N104 65 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 SIX5Q8N196 739 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 CSGALNACT1Q8TDX6 532 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 DQX1Q8TE96 717 aaKnown RBP18.27■□□□□ 0.52
SHMT2-225ENST00000556798 DNASE1L2Q92874 299 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 MRFAP1L1Q96HT8 127 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 LINC00597Q9H2U6 94 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 ARHGEF3Q9NR81 526 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 ASNSD1Q9NWL6 643 aa18.27■□□□□ 0.52
SHMT2-225ENST00000556798 KRBA1A5PL33 1030 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 DDX3XO00571 662 aaKnown RBP eCLIP18.26■□□□□ 0.51
SHMT2-225ENST00000556798 DAB1O75553 588 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 STC2O76061 302 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 SERPING1P05155 500 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 SOX9P48436 509 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 RNASE9P60153 205 aaKnown RBP18.26■□□□□ 0.51
SHMT2-225ENST00000556798 PITX1P78337 314 aaPredicted RBP18.26■□□□□ 0.51
SHMT2-225ENST00000556798 PTP4A2Q12974 167 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 TBX2Q13207 712 aaPredicted RBP18.26■□□□□ 0.51
SHMT2-225ENST00000556798 EML3Q32P44 896 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 DCAF6Q58WW2 860 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 MON1BQ7L1V2 547 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 PHF13Q86YI8 300 aaPredicted RBP18.26■□□□□ 0.51
SHMT2-225ENST00000556798 ZDHHC17Q8IUH5 632 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 BBS7Q8IWZ6 715 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 SLC2A13Q96QE2 648 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 DNAJC7Q99615 494 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 TRIM62Q9BVG3 475 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 ABHD10Q9NUJ1 306 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 ADAM22Q9P0K1 906 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 WNT16Q9UBV4 365 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 KIAA1549LQ6ZVL6 1849 aa18.26■□□□□ 0.51
SHMT2-225ENST00000556798 E2F8A0AVK6 867 aa18.25■□□□□ 0.51
SHMT2-225ENST00000556798 TMEM221A6NGB7 291 aa18.25■□□□□ 0.51
SHMT2-225ENST00000556798 OTOL1A6NHN0 477 aaPredicted RBP18.25■□□□□ 0.51
SHMT2-225ENST00000556798 M0R296 226 aa18.25■□□□□ 0.51
SHMT2-225ENST00000556798 GREM1O60565 184 aa18.25■□□□□ 0.51
SHMT2-225ENST00000556798 GJB6O95452 261 aa18.25■□□□□ 0.51
SHMT2-225ENST00000556798 PDGFBP01127 241 aaPredicted RBP18.25■□□□□ 0.51
SHMT2-225ENST00000556798 GLI1P08151 1106 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms