RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 VIMP08670 466 aaKnown RBP12.16□□□□□ -0.46
SHMT2-212ENST00000554467 GBP1P32455 592 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 LRRC14Q15048 493 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 ARHGAP17Q68EM7 881 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 HFE2Q6ZVN8 426 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 TBC1D1Q86TI0 1168 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-212ENST00000554467 SLC35B2Q8TB61 432 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 DYDC1Q8WWB3 177 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 RSAD2Q8WXG1 361 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 TBCBQ99426 244 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 SAYSD1Q9NPB0 183 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 KRT82Q9NSB4 513 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 NINJ2Q9NZG7 142 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 CPSF2Q9P2I0 782 aaKnown RBP12.16□□□□□ -0.46
SHMT2-212ENST00000554467 MFHAS1Q9Y4C4 1052 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 TCRBV7S3A2A0A539 114 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 A8MUI8 341 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 F5H423 210 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-212ENST00000554467 RGS16O15492 202 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-212ENST00000554467 B3GAT3O94766 335 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 ITGB1P05556 798 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 RBP3P10745 1247 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 SYDE1Q6ZW31 735 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-212ENST00000554467 ANKMY2Q8IV38 441 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 CCDC185Q8N715 623 aa12.16□□□□□ -0.46
SHMT2-212ENST00000554467 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-212ENST00000554467 DHX35Q9H5Z1 703 aaKnown RBP12.16□□□□□ -0.46
SHMT2-212ENST00000554467 CCT8L1PA6NM43 557 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 NUDT17P0C025 328 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 IL4RP24394 825 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 PCK1P35558 622 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 KCNJ2P63252 427 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 NOGQ13253 232 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 RIPK1Q13546 671 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 TIGD5Q53EQ6 642 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 DCAF6Q58WW2 860 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 CCSAPQ6IQ19 270 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-212ENST00000554467 GPRIN1Q7Z2K8 1008 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 KLHDC9Q8NEP7 349 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 TNIP3Q96KP6 325 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 H7C0C1 242 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 GPR182O15218 404 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 ALADP13716 330 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 CREB1P16220 341 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 ATP5OP48047 213 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 FAXCQ5TGI0 409 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 DARS2Q6PI48 645 aaKnown RBP12.15□□□□□ -0.46
SHMT2-212ENST00000554467 DEFB106AQ8N104 65 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 RAET1EQ8TD07 263 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 NKD2Q969F2 451 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-212ENST00000554467 DNALI1O14645 258 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-212ENST00000554467 RASGRF2O14827 1237 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 LRPAP1P30533 357 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 CTCFP49711 727 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-212ENST00000554467 ACLYP53396 1101 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 NME3Q13232 169 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 RBBP5Q15291 538 aaKnown RBP12.15□□□□□ -0.46
SHMT2-212ENST00000554467 DEFB115Q30KQ5 88 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 CLEC20AQ6ZU45 233 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 PCDH18Q9HCL0 1135 aa12.15□□□□□ -0.46
SHMT2-212ENST00000554467 MRPL42Q9Y6G3 142 aaKnown RBP12.15□□□□□ -0.46
SHMT2-212ENST00000554467 ITGAVP06756 1048 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 CHN1P15882 459 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 WARSP23381 471 aaKnown RBP12.14□□□□□ -0.47
SHMT2-212ENST00000554467 PTPN7P35236 360 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 RPL22P35268 128 aaKnown RBP12.14□□□□□ -0.47
SHMT2-212ENST00000554467 BASP1P80723 227 aaKnown RBP12.14□□□□□ -0.47
SHMT2-212ENST00000554467 IFRD2Q12894 506 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-212ENST00000554467 BLMHQ13867 455 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 GKAP1Q5VSY0 366 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-212ENST00000554467 SYPL2Q5VXT5 272 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 TOP6BLQ8N6T0 577 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 ANKRD42Q8N9B4 389 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 PCDH19Q8TAB3 1148 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 P3H4Q92791 437 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 PCED1BQ96HM7 432 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 TMEM209Q96SK2 561 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 SYT15Q9BQS2 421 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 RPS6KL1Q9Y6S9 549 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 NRP1O14786 923 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 MCF2LO15068 1137 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 TTC4O95801 387 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 ALDH1A1P00352 501 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 FESP07332 822 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 NPR3P17342 541 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 EIF3BP55884 814 aaKnown RBP12.14□□□□□ -0.47
SHMT2-212ENST00000554467 HOOK3Q86VS8 718 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 PQLC3Q8N755 202 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 STKLD1Q8NE28 680 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 FAM167BQ9BTA0 163 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 DUSP16Q9BY84 665 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 ZCWPW1Q9H0M4 648 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 RSAD1Q9HA92 442 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 PIDD1Q9HB75 910 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 SRRDQ9UH36 339 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 TTC3P53804 2025 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 APOC4-APOC2K7ER74 178 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 B4GALT3O60512 393 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 APOC2P02655 101 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 SETSIPP0DME0 302 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms