RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ADH5P11766 374 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 TDGF1P13385 188 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 ATP1A3P13637 1013 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 PSEN1P49768 467 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 MRE11P49959 708 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 COPB1P53618 953 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 MYL5Q02045 173 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 NR1H3Q13133 447 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 RAPGEF1Q13905 1077 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 LRRC32Q14392 662 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 STILQ15468 1287 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 ANO6Q4KMQ2 910 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 DGKKQ5KSL6 1271 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 BTBD8Q5XKL5 378 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 KLHDC10Q6PID8 442 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 Q6ZNB5 142 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 TPGS1Q6ZTW0 290 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 RSRC2Q7L4I2 434 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 ASCL5Q7RTU5 278 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 SLC47A2Q86VL8 602 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 SCUBE3Q8IX30 993 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 WDTC1Q8N5D0 677 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 BHMTQ93088 406 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 NAA15Q9BXJ9 866 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 PLCB1Q9NQ66 1216 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 PRMT8Q9NR22 394 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 ST7Q9NRC1 585 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 MARCH2Q9P0N8 246 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 FAM186AA6NE01 2351 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 SDK1Q7Z5N4 2213 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 FYNP06241 537 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 ZNF18P17022 549 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 CORO1AP31146 461 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 NBL1P41271 181 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 MAGEA9P43362 315 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 CXCL12P48061 93 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 SEC13P55735 322 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 KDSRQ06136 332 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 TAF5Q15542 800 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 EMC10Q5UCC4 262 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 HEATR6Q6AI08 1181 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 C1orf228Q6PIY5 440 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 APTXQ7Z2E3 356 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 FAM71AQ8IYT1 594 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 ARHGAP18Q8N392 663 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 SPEM1Q8N4L4 309 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 ZNF276Q8N554 614 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 PIWIL1Q96J94 861 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 SLC4A5Q9BY07 1137 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 GANQ9H2C0 597 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 ZDHHC4Q9NPG8 344 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 CNGB3Q9NQW8 809 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 SPHK2Q9NRA0 654 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 PLK2Q9NYY3 685 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 TBC1D14Q9P2M4 693 aa12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 LIMA1Q9UHB6 759 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-208ENST00000554165 GVINP1Q7Z2Y8 2422 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 E5RJQ4 531 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 K7EQS6 105 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 K7ESF4 209 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 PAPSS1O43252 624 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 ADH1CP00326 375 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 LTFP02788 710 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 CHRM1P11229 460 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 UCHL3P15374 230 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 PXNP49023 591 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 RPL34P49207 117 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 ANO4Q32M45 955 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 TAF3Q5VWG9 929 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 DENND1CQ8IV53 801 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 FMNL3Q8IVF7 1028 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 DHX40Q8IX18 779 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 ETFBKMTQ8IXQ9 262 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 PHTF2Q8N3S3 785 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 KIAA1958Q8N8K9 716 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 RPLP0P6Q8NHW5 317 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 HSFY1Q96LI6 401 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 CPXM1Q96SM3 734 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 FUCA2Q9BTY2 467 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 IRF2BPLQ9H1B7 796 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 FAM207AQ9NSI2 230 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 FBXO4Q9UKT5 387 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 AGO1Q9UL18 857 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 SIK3Q9Y2K2 1263 aa12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 MYO18AQ92614 2054 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-208ENST00000554165 OTOGLQ3ZCN5 2332 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 SYCE3A1L190 88 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 LGALS16A8MUM7 142 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 CHURC1-FNTBB4DL54 471 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 NEDD8-MDP1E9PL57 170 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 HOXC11O43248 304 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 MED7O43513 233 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 TULP3O75386 442 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 KAT7O95251 611 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 DRD1P21728 446 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 FNTBP49356 437 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 CCR3P51677 355 aa12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 POLR2FP61218 127 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 PITX1P78337 314 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-208ENST00000554165 COG7P83436 770 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms