RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 ZNF667Q5HYK9 610 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 C6orf163Q5TEZ5 329 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 IZUMO2Q6UXV1 221 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 XYLT1Q86Y38 959 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 C4orf33Q8N1A6 199 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 LINC01465Q8N7H1 131 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 CXCL16Q9H2A7 254 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 LHX5Q9H2C1 402 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 PDZD7Q9H5P4 517 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 NDUFA13Q9P0J0 144 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 NUMBLQ9Y6R0 609 aa12.72□□□□□ -0.37
SHMT2-207ENST00000553837 MAGEC1O60732 1142 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 ZNF189O75820 626 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 VTNP04004 478 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 ZFXP17010 805 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 CYP3A5P20815 502 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 ARFIP2P53365 341 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 YWHAEP62258 255 aaKnown RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 SLC10A6Q3KNW5 377 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 KBTBD12Q3ZCT8 623 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 CCDC92Q53HC0 331 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 RNASEH2BQ5TBB1 312 aaKnown RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 MAP1SQ66K74 1059 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 TAPT1Q6NXT6 567 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 ARMCX2Q7L311 632 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 RFWD2Q8NHY2 731 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 SLC35B2Q8TB61 432 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 NAT14Q8WUY8 206 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 NKD2Q969F2 451 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 LBHD1Q9BQE6 289 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 KANSL3Q9P2N6 904 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 PAIP2BQ9ULR5 123 aaKnown RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 DRG1Q9Y295 367 aaKnown RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 WASF2Q9Y6W5 498 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 A0A0G2JND7 137 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 CILPO75339 1184 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 MICAL2O94851 1124 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 LGALS2P05162 132 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 ZNF286BP0CG31 522 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 RARBP10826 455 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 SLC26A2P50443 739 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 AP2B1P63010 937 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 TAP1Q03518 808 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 PTPN11Q06124 597 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 RASA2Q15283 850 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 NET1Q7Z628 596 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-207ENST00000553837 EXOC8Q8IYI6 725 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 CCDC110Q8TBZ0 833 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 PCDH18Q9HCL0 1135 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 ERAP1Q9NZ08 941 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 RNF181Q9P0P0 153 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 PCSK1NQ9UHG2 260 aa12.71□□□□□ -0.37
SHMT2-207ENST00000553837 PIK3R2O00459 728 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 PFDN1O60925 122 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 IL18RAPO95256 599 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 IFNB1P01574 187 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 ASLP04424 464 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 ITGAVP06756 1048 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 IDO1P14902 403 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 ARF4P18085 180 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 PAX3P23760 479 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 PSMD7P51665 324 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 NRLP54845 237 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 CDK16Q00536 496 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 OTUD4Q01804 1114 aaKnown RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 TTLL4Q14679 1199 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 SH3PXD2AQ5TCZ1 1133 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 ANKRD22Q5VYY1 191 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 TRNP1Q6NT89 227 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 CAPN12Q6ZSI9 719 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 ACTL9Q8TC94 416 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 SLC35B4Q969S0 331 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 PIWIL1Q96J94 861 aaKnown RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 MPHOSPH6Q99547 160 aaKnown RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 MANSC1Q9H8J5 431 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 PRMT7Q9NVM4 692 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 NDE1Q9NXR1 346 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 DDX56Q9NY93 547 aaKnown RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 SLC24A2Q9UI40 661 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 SMIM31A0A1B0GVY4 71 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 GOLGA8MH3BSY2 632 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 CST8O60676 142 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 CIB2O75838 187 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 TGDSO95455 350 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 FGFR1P11362 822 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 KDELR1P24390 212 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 POLR2BP30876 1174 aaKnown RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 USP46P62068 366 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 TAZQ16635 292 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 CFAP157Q5JU67 520 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 ACAD11Q709F0 780 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 POLNQ7Z5Q5 900 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 SPATA24Q86W54 205 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 TMPRSS6Q8IU80 811 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 TAB3Q8N5C8 712 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 ZBTB8BQ8NAP8 495 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 UBA3Q8TBC4 463 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 SKA1Q96BD8 255 aa12.7□□□□□ -0.38
SHMT2-207ENST00000553837 LENG1Q96BZ8 264 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-207ENST00000553837 PEBP4Q96S96 227 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms