RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 SMARCE1Q969G3 411 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 EEF2KMTQ96G04 330 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 TMEM176AQ96HP8 235 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 SMOC1Q9H4F8 434 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 CISHQ9NSE2 258 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 CLIC5Q9NZA1 410 aa13.42□□□□□ -0.26
LINC00643-202ENST00000553426 TCRBV21S2A2A0A5A6 115 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 KHNYNO15037 678 aaKnown RBP13.41□□□□□ -0.26
LINC00643-202ENST00000553426 NTSR1P30989 418 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 DPP6P42658 865 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 PRCPP42785 496 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 PGFP49763 221 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 MCCD1P59942 119 aaPredicted RBP13.41□□□□□ -0.26
LINC00643-202ENST00000553426 MESP2Q0VG99 397 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 DAB2IPQ5VWQ8 1189 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 MIB1Q86YT6 1006 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 SFTPA1Q8IWL2 248 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 PHTF2Q8N3S3 785 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 WBP2Q969T9 261 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 EDEM2Q9BV94 578 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 UBXN6Q9BZV1 441 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 DCLK3Q9C098 648 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 NMUR1Q9HB89 426 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 OSER1Q9NX31 292 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 MARK1Q9P0L2 795 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 ARMCX3Q9UH62 379 aaPredicted RBP13.41□□□□□ -0.26
LINC00643-202ENST00000553426 MYO16Q9Y6X6 1858 aa13.41□□□□□ -0.26
LINC00643-202ENST00000553426 ACACBO00763 2458 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 CACNG3O60359 315 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 ADAM23O75077 832 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 HOXB2P14652 356 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 CHKAP35790 457 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 DGKGP49619 791 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 LRRC63Q05C16 580 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 EFEMP1Q12805 493 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 COBLL1Q53SF7 1204 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 SPDYCQ5MJ68 293 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 TCEAL6Q6IPX3 200 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 RSRC2Q7L4I2 434 aaKnown RBP13.4□□□□□ -0.26
LINC00643-202ENST00000553426 CHPFQ8IZ52 775 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 FMR1NBQ8N0W7 255 aaPredicted RBP13.4□□□□□ -0.26
LINC00643-202ENST00000553426 SLC4A11Q8NBS3 891 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 OLIG1Q8TAK6 271 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 SEMA4DQ92854 862 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 TCEAL3Q969E4 200 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 ZDHHC4Q9NPG8 344 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 RXFP3Q9NSD7 469 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 HESX1Q9UBX0 185 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 RASAL2Q9UJF2 1139 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 NUDT5Q9UKK9 219 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 STRIP2Q9ULQ0 834 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 STARD13Q9Y3M8 1113 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 USP3Q9Y6I4 520 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 KIAA1549LQ6ZVL6 1849 aa13.4□□□□□ -0.26
LINC00643-202ENST00000553426 EML5Q05BV3 1969 aa13.4□□□□□ -0.27
LINC00643-202ENST00000553426 MYOFQ9NZM1 2061 aa13.4□□□□□ -0.27
LINC00643-202ENST00000553426 MAP1BP46821 2468 aaKnown RBP13.39□□□□□ -0.27
LINC00643-202ENST00000553426 ANTXRLA6NF34 631 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 PSMA7O14818 248 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 MDM4O15151 490 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 GREM1O60565 184 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 HNRNPLP14866 589 aaKnown RBP eCLIP13.39□□□□□ -0.27
LINC00643-202ENST00000553426 BCKDHBP21953 392 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 P2RY2P41231 377 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 PPP1R2P41236 205 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 RAD23BP54727 409 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 CETN1Q12798 172 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 E2F5Q15329 346 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 SGO2Q562F6 1265 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 ARHGAP17Q68EM7 881 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 PIGZQ86VD9 579 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 ANKRD52Q8NB46 1076 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 RLN3Q8WXF3 142 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 PIGKQ92643 395 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 TATDN2Q93075 761 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 TIGD1Q96MW7 591 aa13.39□□□□□ -0.27
LINC00643-202ENST00000553426 IPO9Q96P70 1041 aaKnown RBP13.39□□□□□ -0.27
LINC00643-202ENST00000553426 NUSAP1Q9BXS6 441 aaKnown RBP13.39□□□□□ -0.27
LINC00643-202ENST00000553426 METTL14Q9HCE5 456 aaKnown RBP13.39□□□□□ -0.27
LINC00643-202ENST00000553426 LAMA1P25391 3075 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 C4orf47A7E2U8 309 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 AP5Z1O43299 807 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 ZNF217O75362 1048 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 STC2O76061 302 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 CYBBP04839 570 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 CD19P15391 556 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 TBXAS1P24557 533 aaPredicted RBP13.38□□□□□ -0.27
LINC00643-202ENST00000553426 TKTL1P51854 596 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 BCAT1P54687 386 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 LMAN2Q12907 356 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 CUL2Q13617 745 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 ST3GAL2Q16842 350 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 CBWD6Q4V339 395 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 CBWD3Q5JTY5 395 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 CBWD5Q5RIA9 395 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 ANKRD40Q6AI12 368 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 SLC36A4Q6YBV0 504 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 Q6ZNB5 142 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 SCD5Q86SK9 330 aa13.38□□□□□ -0.27
LINC00643-202ENST00000553426 BHMTQ93088 406 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms