RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 ZFRQ96KR1 1074 aaKnown RBP16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 SYT11Q9BT88 431 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 TRIM62Q9BVG3 475 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 SLC2A4RGQ9NR83 387 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 MARCH2Q9P0N8 246 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 FBXL21Q9UKT6 434 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 SH3BP1Q9Y3L3 701 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 BZW2Q9Y6E2 419 aaKnown RBP16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 SLC12A8A0AV02 714 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 SERPING1P05155 500 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 NCAM1P13591 858 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 COG7P83436 770 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 PFKPQ01813 784 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 CENPCQ03188 943 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 GOLGA8FQ08AF8 430 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 GOLGA8DPQ0D2H9 430 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 HGSNATQ68CP4 663 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 OLFML1Q6UWY5 402 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 MMS22LQ6ZRQ5 1243 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 OR8K1Q8NGG5 319 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 PIWIL1Q96J94 861 aaKnown RBP16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 C11orf70Q9BRQ4 267 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 POPDC2Q9HBU9 364 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 ASNSD1Q9NWL6 643 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 DUS2Q9NX74 493 aaKnown RBP16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 SFMBT1Q9UHJ3 866 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 NAALADL1Q9UQQ1 740 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 C5orf42Q9H799 3197 aa16.97■□□□□ 0.31
CHMP1A-209ENST00000550872 PIEZO1Q92508 2521 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 GOLGA8SH3BPF8 625 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 SCAMP3O14828 347 aaKnown RBP16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 GRAP2O75791 330 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 FYNP06241 537 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 GLI1P08151 1106 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 HMBSP08397 361 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 MMP8P22894 467 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 HOXD11P31277 338 aaPredicted RBP16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 IFNAR2P48551 515 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 ADKP55263 362 aaKnown RBP16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 SIGLEC14Q08ET2 396 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 ACAD10Q6JQN1 1059 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 MSANTD2Q6P1R3 559 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 SLC26A9Q7LBE3 791 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 VPS36Q86VN1 386 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 XYLT1Q86Y38 959 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 PHF13Q86YI8 300 aaPredicted RBP16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 CSGALNACT1Q8TDX6 532 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 WBP2Q969T9 261 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 ZNHIT6Q9NWK9 470 aaKnown RBP16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 ADAM22Q9P0K1 906 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 WNT16Q9UBV4 365 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 LSM7Q9UK45 103 aaKnown RBP16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 WNT6Q9Y6F9 365 aa16.96■□□□□ 0.31
CHMP1A-209ENST00000550872 HELZP42694 1942 aaKnown RBP16.96■□□□□ 0.3
CHMP1A-209ENST00000550872 E2F8A0AVK6 867 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 TMCO5BA8MYB1 307 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 PRR33A8MZF0 331 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 AKR1B15C9JRZ8 316 aaPredicted RBP16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 DDX3XO00571 662 aaKnown RBP eCLIP16.95■□□□□ 0.32e-9■■■■□ 26.7
CHMP1A-209ENST00000550872 SLC9A3R1O14745 358 aaPredicted RBP16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 HSF2BPO75031 334 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 MFAP3LO75121 409 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 CALB1P05937 261 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 HNRNPH3P31942 346 aaKnown RBP16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 RNASE9P60153 205 aaKnown RBP16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 TBX2Q13207 712 aaPredicted RBP16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 PDGFRLQ15198 375 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 DCAF6Q58WW2 860 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 FAM102AQ5T9C2 384 aaPredicted RBP16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 SYPL2Q5VXT5 272 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 TRIM68Q6AZZ1 485 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 TRIM67Q6ZTA4 783 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 BEND5Q7L4P6 421 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 PHLDB2Q86SQ0 1253 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 DEFB106AQ8N104 65 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 OLIG1Q8TAK6 271 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 OSCP1Q8WVF1 389 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 DNASE1L2Q92874 299 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 ASIC4Q96FT7 647 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 DNAJC7Q99615 494 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 FAM83CQ9BQN1 747 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 LINC00597Q9H2U6 94 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 CA14Q9ULX7 337 aa16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 HBS1LQ9Y450 684 aaKnown RBP16.95■□□□□ 0.3
CHMP1A-209ENST00000550872 STC2O76061 302 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 PLEKP08567 350 aaPredicted RBP16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 SCNN1AP37088 669 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 CDK17Q00537 523 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 TNK2Q07912 1038 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 PTP4A2Q12974 167 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 SLC44A4Q53GD3 710 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 PPP1R2P3Q6NXS1 205 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 HTR3DQ70Z44 454 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 CNGA4Q8IV77 575 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 DRC7Q8IY82 874 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 KIAA1958Q8N8K9 716 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 TTC8Q8TAM2 541 aa16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 DQX1Q8TE96 717 aaKnown RBP16.94■□□□□ 0.3
CHMP1A-209ENST00000550872 SLC2A13Q96QE2 648 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms