RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 RAB41Q5JT25 222 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 C10orf76Q5T2E6 689 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 PMS2CLQ68D20 193 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 RSRC2Q7L4I2 434 aaKnown RBP11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 LPCAT2Q7L5N7 544 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 PIGZQ86VD9 579 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 C12orf40Q86WS4 652 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 PHTF2Q8N3S3 785 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 NAT16Q8N8M0 369 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 MDGA1Q8NFP4 955 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 OLIG1Q8TAK6 271 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 TATDN2Q93075 761 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 SLC35C1Q96A29 364 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 EEF2KMTQ96G04 330 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 NMUR1Q9HB89 426 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 LRRC4Q9HBW1 653 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 OLA1Q9NTK5 396 aaKnown RBP11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 DNAJC17Q9NVM6 304 aaKnown RBP11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 POLR3BQ9NW08 1133 aaPredicted RBP11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 OSER1Q9NX31 292 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 BCCIPQ9P287 314 aaKnown RBP eCLIP11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 SDK1Q7Z5N4 2213 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 PTPRDP23468 1912 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 GREB1Q4ZG55 1949 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 ANAPC1Q9H1A4 1944 aa11.43□□□□□ -0.58
VTI1BP3-201ENST00000550220 NEDD8-MDP1E9PL57 170 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 SGK1O00141 431 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 GFRA2O00451 464 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 XPO1O14980 1071 aaKnown RBP11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 ZNF217O75362 1048 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 STC2O76061 302 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 FGFR1OPO95684 399 aaKnown RBP11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 ZBED1O96006 694 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 CYBBP04839 570 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 PAEPP09466 180 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 VDRP11473 427 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 NTSR1P30989 418 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 HOXC13P31276 330 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 DGKGP49619 791 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 PGFP49763 221 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 TKTL1P51854 596 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 ZNF132P52740 706 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 ZNF445P59923 1031 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 BST2Q10589 180 aaKnown RBP11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 STILQ15468 1287 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 CCDC40Q4G0X9 1142 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 CBWD6Q4V339 395 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 CBWD3Q5JTY5 395 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 CBWD5Q5RIA9 395 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 PM20D1Q6GTS8 502 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 TMEM92Q6UXU6 159 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 SLC36A4Q6YBV0 504 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 Q6ZNB5 142 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 TPGS1Q6ZTW0 290 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 SCD5Q86SK9 330 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 TTC30AQ86WT1 665 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 SCML4Q8N228 414 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 PGBD3Q8N328 593 aa11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 IPO9Q96P70 1041 aaKnown RBP11.42□□□□□ -0.58
VTI1BP3-201ENST00000550220 DCHS1Q96JQ0 3298 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 TCRBV21S2A2A0A5A6 115 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 KHNYNO15037 678 aaKnown RBP11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 DCLK1O15075 740 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 TIMM44O43615 452 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 ADAM23O75077 832 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 SETSIPP0DME0 302 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 CD19P15391 556 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 P2RY2P41231 377 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 FMO5P49326 533 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 PMS1P54277 932 aaKnown RBP11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 YWHAGP61981 247 aaKnown RBP eCLIP11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 EFEMP1Q12805 493 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 SF3A2Q15428 464 aaKnown RBP11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 EMC10Q5UCC4 262 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 CYP2U1Q7Z449 544 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 MIB1Q86YT6 1006 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 CHPFQ8IZ52 775 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 RNF139Q8WU17 664 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 UCMAQ8WVF2 138 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 HMGB4Q8WW32 186 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 KCTD13Q8WZ19 329 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 PLD4Q96BZ4 506 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 NT5C1BQ96P26 610 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 ARID3AQ99856 593 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 SLC2A11Q9BYW1 496 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 TPSD1Q9BZJ3 242 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 MARCH2Q9P0N8 246 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 FBXO10Q9UK96 956 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 NUDT5Q9UKK9 219 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 TSPAN16Q9UKR8 245 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 SLC27A6Q9Y2P4 619 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 NCOR2Q9Y618 2525 aa11.41□□□□□ -0.58
VTI1BP3-201ENST00000550220 FRYLO94915 3013 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 TRIM49BA6NDI0 452 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 AP5Z1O43299 807 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 GDF9O60383 454 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 PENKP01210 267 aaPredicted RBP11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 ADRB1P08588 477 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 CISD3P0C7P0 127 aa11.4□□□□□ -0.58
VTI1BP3-201ENST00000550220 CHRM1P11229 460 aaPredicted RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms