RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 TCTN1Q2MV58 587 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 PLEKHA7Q6IQ23 1121 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 C11orf63Q6NUN7 778 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 ELMSAN1Q6PJG2 1045 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 LCLAT1Q6UWP7 414 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 ZNF572Q7Z3I7 529 aaPredicted RBP8.9□□□□□ -0.98
VPS29-203ENST00000546588 NECAB2Q7Z6G3 386 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 COLGALT2Q8IYK4 626 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 RNF168Q8IYW5 571 aaPredicted RBP8.9□□□□□ -0.98
VPS29-203ENST00000546588 TMEM130Q8N3G9 435 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 DBF4BQ8NFT6 615 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 GRIN3AQ8TCU5 1115 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 TFAP2BQ92481 460 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 SHDQ96IW2 340 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 FAM210AQ96ND0 272 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 NOX5Q96PH1 765 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 DEPDC7Q96QD5 511 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 MRPL9Q9BYD2 267 aaKnown RBP8.9□□□□□ -0.98
VPS29-203ENST00000546588 SMG9Q9H0W8 520 aaKnown RBP8.9□□□□□ -0.98
VPS29-203ENST00000546588 ST7Q9NRC1 585 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 TRIM10Q9UDY6 481 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 HMGXB4Q9UGU5 601 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 DNAI1Q9UI46 699 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 L1RE1Q9UN81 338 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 STXBP5LQ9Y2K9 1186 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 JRKLQ9Y4A0 524 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 DUSP10Q9Y6W6 482 aa8.9□□□□□ -0.98
VPS29-203ENST00000546588 MKI67P46013 3256 aaKnown RBP8.89□□□□□ -0.99
VPS29-203ENST00000546588 ABHD14A-ACY1A0A1B0GW23 586 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 ARHGEF37A1IGU5 675 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 GRID2IPA4D2P6 1211 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 PQBP1O60828 265 aaKnown RBP8.89□□□□□ -0.99
VPS29-203ENST00000546588 BAIAP3O94812 1187 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 TIMP1P01033 207 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 FTLP02792 175 aaPredicted RBP8.89□□□□□ -0.99
VPS29-203ENST00000546588 WEE2P0C1S8 567 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 MAN1A1P33908 653 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 GPD2P43304 727 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 CLCNKBP51801 687 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 NDST1P52848 882 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 GPC5P78333 572 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 MPP2Q14168 576 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 LRRC14Q15048 493 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 ZNF423Q2M1K9 1284 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 PRRT3Q5FWE3 981 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 LLGL2Q6P1M3 1020 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 GLB1LQ6UWU2 654 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 SYT10Q6XYQ8 523 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 ARCQ7LC44 396 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 MCOLN2Q8IZK6 566 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 SLC35F6Q8N357 371 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 PDCL2Q8N4E4 241 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 WDTC1Q8N5D0 677 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 TMEM35BQ8NCS4 154 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 APPL2Q8NEU8 664 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 FNIP1Q8TF40 1166 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 CTNNBL1Q8WYA6 563 aaPredicted RBP8.89□□□□□ -0.99
VPS29-203ENST00000546588 LPPQ93052 612 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 ELMO3Q96BJ8 720 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 ZNF689Q96CS4 500 aaPredicted RBP8.89□□□□□ -0.99
VPS29-203ENST00000546588 PAWRQ96IZ0 340 aaKnown RBP8.89□□□□□ -0.99
VPS29-203ENST00000546588 CASD1Q96PB1 797 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 ALS2CR12Q96Q35 445 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 PKMYT1Q99640 499 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 TMEM175Q9BSA9 504 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.89□□□□□ -0.99
VPS29-203ENST00000546588 THAP2Q9H0W7 228 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 GOLGA2P5Q9HBQ8 144 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 TBC1D13Q9NVG8 400 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 DSEQ9UL01 958 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 GUCA1BQ9UMX6 200 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 CYP8B1Q9UNU6 501 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 TFR2Q9UP52 801 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 TRIM33Q9UPN9 1127 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 SNX9Q9Y5X1 595 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 MRFAP1Q9Y605 127 aa8.89□□□□□ -0.99
VPS29-203ENST00000546588 MTCL1Q9Y4B5 1905 aaKnown RBP8.89□□□□□ -0.99
VPS29-203ENST00000546588 KIAA0100Q14667 2235 aaKnown RBP8.89□□□□□ -0.99
VPS29-203ENST00000546588 THAP12O43422 761 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 FGFR1P11362 822 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 NID1P14543 1247 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 NSFP46459 744 aaKnown RBP8.88□□□□□ -0.99
VPS29-203ENST00000546588 RAP1GAPP47736 663 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 LHX1P48742 406 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 CDH8P55286 799 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 GNG11P61952 73 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 TAP1Q03518 808 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 ITIH3Q06033 890 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 SGO2Q562F6 1265 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 NOMO2Q5JPE7 1267 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 MFSD5Q6N075 450 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 DCLRE1AQ6PJP8 1040 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 SCARA5Q6ZMJ2 495 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 ADGRF2Q8IZF7 708 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 SYCE1Q8N0S2 351 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 SCML4Q8N228 414 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 FAM169BQ8N8A8 192 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 NIPA2Q8N8Q9 360 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 C3orf20Q8ND61 904 aa8.88□□□□□ -0.99
VPS29-203ENST00000546588 URGCPQ8TCY9 931 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms