RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MAP3K7CLP57077 242 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 SLC8A3P57103 927 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 GEMIN4P57678 1058 aaKnown RBP16.96■□□□□ 0.31
COL4A1-204ENST00000543140 KCNJ11Q14654 390 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 ZKSCAN8Q15776 578 aaPredicted RBP16.96■□□□□ 0.31
COL4A1-204ENST00000543140 DPYSL2Q16555 572 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 SPRED3Q2MJR0 410 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 NUGGCQ68CJ6 796 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 YTHDF3Q7Z739 585 aaKnown RBP16.96■□□□□ 0.31
COL4A1-204ENST00000543140 PIGWQ7Z7B1 504 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 TDRPQ86YL5 185 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 DNAI2Q9GZS0 605 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 SAMD15Q9P1V8 674 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 MYO18AQ92614 2054 aaKnown RBP16.96■□□□□ 0.31
COL4A1-204ENST00000543140 CYBAP13498 195 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 GOT1P17174 413 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 NPR3P17342 541 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 AMPD1P23109 780 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 MATKP42679 507 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 GJA9P57773 515 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 EFHC1Q5JVL4 640 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 ARHGEF18Q6ZSZ5 1173 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 C3orf58Q8NDZ4 430 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 CKAP2Q8WWK9 683 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 CSPG4P5Q96PW8 444 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 PAAF1Q9BRP4 392 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 AGO3Q9H9G7 860 aaKnown RBP16.96■□□□□ 0.3
COL4A1-204ENST00000543140 ETNK2Q9NVF9 386 aa16.96■□□□□ 0.3
COL4A1-204ENST00000543140 GOLGA6L7A0A1B0GV03 622 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 FAM47DPA6NHR8 397 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 CASTOR2A6NHX0 329 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 THP07101 528 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 EFHC2Q5JST6 749 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 CLEC20AQ6ZU45 233 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 RSPH3Q86UC2 560 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 PPM1EQ8WY54 764 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 NCAPGQ9BPX3 1015 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 LRRC4Q9HBW1 653 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 CRTAC1Q9NQ79 661 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 CYLDQ9NQC7 956 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 KRT82Q9NSB4 513 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 PAK5Q9P286 719 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 PSMC3IPQ9P2W1 217 aaPredicted RBP16.95■□□□□ 0.3
COL4A1-204ENST00000543140 ACTL7BQ9Y614 415 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 ARL5CA6NH57 179 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 APRTP07741 180 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 FLT3LGP49771 235 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 SCNN1GP51170 649 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 WDR4P57081 412 aaKnown RBP16.95■□□□□ 0.3
COL4A1-204ENST00000543140 INHBEP58166 350 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 YWHAZP63104 245 aaKnown RBP16.95■□□□□ 0.3
COL4A1-204ENST00000543140 SYPL2Q5VXT5 272 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 HFE2Q6ZVN8 426 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 TGS1Q96RS0 853 aaKnown RBP16.95■□□□□ 0.3
COL4A1-204ENST00000543140 PAFAH2Q99487 392 aa16.95■□□□□ 0.3
COL4A1-204ENST00000543140 SENP6Q9GZR1 1112 aaPredicted RBP16.95■□□□□ 0.3
COL4A1-204ENST00000543140 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 BCLAF3A2AJT9 711 aaKnown RBP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 FAM155AB1AL88 458 aaPredicted RBP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 I3L4J1 428 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 GABRDO14764 452 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 MRPS5P82675 430 aaKnown RBP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 NR1H3Q13133 447 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 NME3Q13232 169 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 SLC25A52Q3SY17 297 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 PAN2Q504Q3 1202 aaKnown RBP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 MFSD14CQ5VZR4 134 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 ARCQ7LC44 396 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 SIX6OS1Q8N1H7 587 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 AGGF1Q8N302 714 aaeCLIP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 ANKS4BQ8N8V4 417 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 SMC6Q96SB8 1091 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 KCNK16Q96T55 309 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 NSRP1Q9H0G5 558 aaKnown RBP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 ACSS3Q9H6R3 686 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 SLC24A2Q9UI40 661 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 CAPN7Q9Y6W3 813 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 MYBPHLA2RUH7 354 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 KBTBD13C9JR72 458 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 F5H423 210 aaPredicted RBP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 KPNA6O60684 536 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 RPA3P35244 121 aaPredicted RBP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 SCNN1AP37088 669 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 THPOP40225 353 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 TKTL1P51854 596 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 YWHAGP61981 247 aaKnown RBP eCLIP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 KCNT2Q6UVM3 1135 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 DSTYKQ6XUX3 929 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 AGMOQ6ZNB7 445 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 CTU1Q7Z7A3 348 aaKnown RBP16.94■□□□□ 0.3
COL4A1-204ENST00000543140 SPC25Q9HBM1 224 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 ETNK1Q9HBU6 452 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 SLC38A7Q9NVC3 462 aa16.94■□□□□ 0.3
COL4A1-204ENST00000543140 SMAPO00193 183 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 CHADO15335 359 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 FOXN2P32314 431 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 PPP1R21Q6ZMI0 780 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 STRADAQ7RTN6 431 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 SERINC5Q86VE9 423 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 ADAM32Q8TC27 787 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms