RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 SMRP1Q8NCR6 262 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 SHKBP1Q8TBC3 707 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 SLC35G2Q8TBE7 412 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 DQX1Q8TE96 717 aaKnown RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 ATXN2LQ8WWM7 1075 aaKnown RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 SUSD6Q92537 303 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 FBXO32Q969P5 355 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 MCEEQ96PE7 176 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 SLITRK1Q96PX8 696 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 TRIM62Q9BVG3 475 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 MRPL47Q9HD33 250 aaKnown RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 WDR6Q9NNW5 1121 aaKnown RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 ABCC13Q9NSE7 274 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 HCFC1R1Q9NWW0 138 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 RRN3Q9NYV6 651 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 LCMT1Q9UIC8 334 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.03□□□□□ -0.64
VPS33A-204ENST00000540669 FAM170AA1A519 330 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 GOLGA8SH3BPF8 625 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 I6L893 689 aaPredicted RBP11.03□□□□□ -0.64
VPS33A-204ENST00000540669 CCL16O15467 120 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 IRAK2O43187 625 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 CCP110O43303 1012 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 ZSCAN12O43309 604 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 BUB1BO60566 1050 aaPredicted RBP11.03□□□□□ -0.64
VPS33A-204ENST00000540669 XYLBO75191 536 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 PROSCO94903 275 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 FGF19O95750 216 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 TCF3P15923 654 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 TFE3P19532 575 aaPredicted RBP11.03□□□□□ -0.64
VPS33A-204ENST00000540669 NOS2P35228 1153 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 HDAC4P56524 1084 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 SLC25A52Q3SY17 297 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 CCDC14Q49A88 953 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 SYPL2Q5VXT5 272 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 OR6B2Q6IFH4 312 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 STRADAQ7RTN6 431 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 KIAA1328Q86T90 577 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 DEFB106AQ8N104 65 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 EMC1Q8N766 993 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 SLC39A13Q96H72 371 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 CNPY3Q9BT09 278 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 SYNCQ9H7C4 482 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 CLDND1Q9NY35 253 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 ANAPC7Q9UJX3 599 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 CLUHO75153 1309 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 DOCK4Q8N1I0 1966 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 CHD5Q8TDI0 1954 aa11.03□□□□□ -0.64
VPS33A-204ENST00000540669 CCDC195A0A1B0GUA6 201 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 KRT86O43790 486 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 GREM1O60565 184 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 LRCH4O75427 683 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 RHOP08100 348 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 GPD1P21695 349 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 CDC25CP30307 473 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 PCK1P35558 622 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 TIE1P35590 1138 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 SLC25A11Q02978 314 aaKnown RBP11.02□□□□□ -0.65
VPS33A-204ENST00000540669 ITIH3Q06033 890 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 SCAPQ12770 1279 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 ACAP1Q15027 740 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 TAC4Q86UU9 113 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 ZSCAN30Q86W11 494 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 CPNE8Q86YQ8 564 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 ADAMTS19Q8TE59 1207 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 UBE2Q2Q8WVN8 375 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 RXFP2Q8WXD0 754 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 SELENOOQ9BVL4 669 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 ADAM7Q9H2U9 754 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 IGFLR1Q9H665 355 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 ASAH2Q9NR71 780 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 TLR8Q9NR97 1041 aaKnown RBP11.02□□□□□ -0.65
VPS33A-204ENST00000540669 CTTNBP2NLQ9P2B4 639 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 MYO1AQ9UBC5 1043 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 ZMYM5Q9UJ78 669 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 NAALADL1Q9UQQ1 740 aa11.02□□□□□ -0.65
VPS33A-204ENST00000540669 TCF20Q9UGU0 1960 aaKnown RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 GFRA2O00451 464 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 COCHO43405 550 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 TLR5O60602 858 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 GRAP2O75791 330 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 PTPN2P17706 415 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 DDX6P26196 483 aaKnown RBP eCLIP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 GABRR2P28476 465 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 CXCR3P49682 368 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 SLC7A9P82251 487 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 RING1Q06587 406 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 PIGHQ14442 188 aaPredicted RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 PABPC1LQ4VXU2 614 aaKnown RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 RAB6CQ53S08 254 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 TJAP1Q5JTD0 557 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 C17orf53Q8N3J3 647 aaPredicted RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 C12orf76Q8N812 135 aaPredicted RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 FAM71BQ8TC56 605 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 SMG7Q92540 1137 aaKnown RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 NTAN1Q96AB6 310 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 FAM149B1Q96BN6 582 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 TCEAL4Q96EI5 215 aa11.01□□□□□ -0.65
VPS33A-204ENST00000540669 ZNF512Q96ME7 567 aaPredicted RBP11.01□□□□□ -0.65
VPS33A-204ENST00000540669 CFAP57Q96MR6 1250 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms