RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 HNRNPH1P31943 449 aaKnown RBP11.16□□□□□ -0.62
CLIP1-213ENST00000540338 FCGRTP55899 365 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 ITKQ08881 620 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 TAF12Q16514 161 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 UBR7Q8N806 425 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 GAD1Q99259 594 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 ETNK2Q9NVF9 386 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-213ENST00000540338 IPPQ9Y573 584 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 TM9SF1O15321 606 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 CIB2O75838 187 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 IVDP26440 423 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 NOS2P35228 1153 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 GJA5P36382 358 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 SLC45A4Q5BKX6 768 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 MAMDC4Q6UXC1 1216 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 PLD5Q8N7P1 536 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 NPLOC4Q8TAT6 608 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 HTR3CQ8WXA8 447 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 ERP27Q96DN0 273 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 RSRC1Q96IZ7 334 aaKnown RBP11.16□□□□□ -0.62
CLIP1-213ENST00000540338 NACA2Q9H009 215 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 MTSS1O43312 755 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 NPR3P17342 541 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 E2F5Q15329 346 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 SH3PXD2AQ5TCZ1 1133 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 RAPH1Q70E73 1250 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 FAM111AQ96PZ2 611 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 GOLGA2P5Q9HBQ8 144 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 AAASQ9NRG9 546 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 SDR42E2A6NKP2 422 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 PAPSS1O43252 624 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-213ENST00000540338 UBOX5O94941 541 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 CREB1P16220 341 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 GDF10P55107 478 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 ANKRD22Q5VYY1 191 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 ARHGAP17Q68EM7 881 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 SLC26A9Q7LBE3 791 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 SPATA2LQ8IUW3 424 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-213ENST00000540338 CNPY4Q8N129 248 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 NDUFAF2Q8N183 169 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 TOP6BLQ8N6T0 577 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 LRRC39Q96DD0 335 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 WDCPQ9H6R7 721 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 PRM3Q9NNZ6 103 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 CYTH4Q9UIA0 394 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 TLK1Q9UKI8 766 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 CDY2AQ9Y6F7 541 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 CASTOR2A6NHX0 329 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 FOXO6A8MYZ6 492 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 HAUS5O94927 633 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 ESRRAP11474 423 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-213ENST00000540338 TYK2P29597 1187 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 RPA3P35244 121 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-213ENST00000540338 MATKP42679 507 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 GABRB2P47870 512 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 ZNF252P-AS1Q0IIN9 211 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 KBTBD12Q3ZCT8 623 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 MROH9Q5TGP6 573 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 CCNJLQ8IV13 435 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 COLGALT1Q8NBJ5 622 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 TCP10LQ8TDR4 215 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 FGD4Q96M96 766 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 APBA2Q99767 749 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 VPS11Q9H270 941 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 HACD1B0YJ81 288 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 ABLIM1O14639 778 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 EPHB2P29323 1055 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 GRIK1P39086 918 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 MRPS6P82932 125 aaKnown RBP11.15□□□□□ -0.62
CLIP1-213ENST00000540338 CXCL17Q6UXB2 119 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 TTC30AQ86WT1 665 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 TMEM86AQ8N2M4 240 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 SMC1BQ8NDV3 1235 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 LENG1Q96BZ8 264 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-213ENST00000540338 SCYL1Q96KG9 808 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 SLC4A5Q9BY07 1137 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 DPEP3Q9H4B8 488 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 PRDM16Q9HAZ2 1276 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 POPDC2Q9HBU9 364 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 PCMTD2Q9NV79 361 aa11.15□□□□□ -0.62
CLIP1-213ENST00000540338 C5orf60A6NFR6 353 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 TRDMT1O14717 391 aaKnown RBP11.15□□□□□ -0.63
CLIP1-213ENST00000540338 XPO1O14980 1071 aaKnown RBP11.15□□□□□ -0.63
CLIP1-213ENST00000540338 MDM4O15151 490 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 POLBP06746 335 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 PYGBP11216 843 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 PTPN9P43378 593 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 ARPP19P56211 112 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 MCCD1P59942 119 aaPredicted RBP11.15□□□□□ -0.63
CLIP1-213ENST00000540338 MTFR1Q15390 333 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 MAPRE1Q15691 268 aaKnown RBP11.15□□□□□ -0.63
CLIP1-213ENST00000540338 SMAD1Q15797 465 aaKnown RBP11.15□□□□□ -0.63
CLIP1-213ENST00000540338 SOWAHAQ2M3V2 549 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 PPP1R15BQ5SWA1 713 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 TMEM110Q86TL2 294 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 RASSF3Q86WH2 238 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 TDRPQ86YL5 185 aa11.15□□□□□ -0.63
CLIP1-213ENST00000540338 WDR75Q8IWA0 830 aaKnown RBP11.15□□□□□ -0.63
CLIP1-213ENST00000540338 CYP4X1Q8N118 509 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms