RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SOX5P35711 763 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 COG7P83436 770 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 CCDC173Q0VFZ6 552 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 EFEMP1Q12805 493 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 NR1H3Q13133 447 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 FZD5Q13467 585 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 HTR3DQ70Z44 454 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 TMEM110Q86TL2 294 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 MIB1Q86YT6 1006 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 PASD1Q8IV76 773 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 DTWD2Q8NBA8 298 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 EPS8L1Q8TE68 723 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 CLEC4CQ8WTT0 213 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 WBP2Q969T9 261 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 PCMTD1Q96MG8 357 aaPredicted RBP15.75■□□□□ 0.11
CPSF1-208ENST00000532560 NOX5Q96PH1 765 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 SPAG5Q96R06 1193 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 LSM7Q9UK45 103 aaKnown RBP15.75■□□□□ 0.11
CPSF1-208ENST00000532560 STRIP2Q9ULQ0 834 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 CEP83Q9Y592 693 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 A0A1B0GTH6 734 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 E5RJQ4 531 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 TRDMT1O14717 391 aaKnown RBP15.74■□□□□ 0.11
CPSF1-208ENST00000532560 PAPSS1O43252 624 aaPredicted RBP15.74■□□□□ 0.11
CPSF1-208ENST00000532560 STC2O76061 302 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 CDH5P33151 784 aaPredicted RBP15.74■□□□□ 0.11
CPSF1-208ENST00000532560 LRRC32Q14392 662 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 PON2Q15165 354 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 DHCR24Q15392 516 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 FILIP1LQ4L180 1135 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 TMEM196Q5HYL7 178 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 MSANTD2Q6P1R3 559 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 Q6ZNB5 142 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 BBS7Q8IWZ6 715 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 ADGRG2Q8IZP9 1017 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 WDTC1Q8N5D0 677 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 C1orf131Q8NDD1 294 aaKnown RBP15.74■□□□□ 0.11
CPSF1-208ENST00000532560 PRSS33Q8NF86 280 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 RNF139Q8WU17 664 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 DDX1Q92499 740 aaKnown RBP15.74■□□□□ 0.11
CPSF1-208ENST00000532560 GOLGA1Q92805 767 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 EXOC4Q96A65 974 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 IER2Q9BTL4 223 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 TRIM62Q9BVG3 475 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 MIS12Q9H081 205 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 NLRC4Q9NPP4 1024 aa15.74■□□□□ 0.11
CPSF1-208ENST00000532560 TEX33O43247 280 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 GFPT2O94808 682 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 ADH1CP00326 375 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 CHRNB1P11230 501 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 STAT1P42224 750 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 CCINQ13939 588 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 GAB4Q2WGN9 574 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 DGKKQ5KSL6 1271 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 BEND5Q7L4P6 421 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 NOP9Q86U38 636 aaKnown RBP15.73■□□□□ 0.11
CPSF1-208ENST00000532560 ZNF677Q86XU0 584 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 SCUBE3Q8IX30 993 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 EDEM1Q92611 657 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 PLD4Q96BZ4 506 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 PPP1R13BQ96KQ4 1090 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 CPXM1Q96SM3 734 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 CHRDQ9H2X0 955 aa15.73■□□□□ 0.11
CPSF1-208ENST00000532560 NOCTQ9UK39 431 aaKnown RBP15.73■□□□□ 0.11
CPSF1-208ENST00000532560 HBS1LQ9Y450 684 aaKnown RBP15.73■□□□□ 0.11
CPSF1-208ENST00000532560 MUC6Q6W4X9 2439 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 A0A1W2PQC6 194 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 SLC12A8A0AV02 714 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 GOLGA6L19H0YKK7 550 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 LSM8O95777 96 aaKnown RBP15.72■□□□□ 0.11
CPSF1-208ENST00000532560 SERPINC1P01008 464 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 ADH5P11766 374 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 PTPN5P54829 565 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 SNX16P57768 344 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 TCF15Q12870 199 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 PTPN20Q4JDL3 420 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 LY6G5CQ5SRR4 150 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 RHBDF2Q6PJF5 856 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 FMNL3Q8IVF7 1028 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 TMEM35BQ8NCS4 154 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 IPO4Q8TEX9 1081 aaKnown RBP15.72■□□□□ 0.11
CPSF1-208ENST00000532560 CD101Q93033 1021 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 FAM149B1Q96BN6 582 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 NAP1L5Q96NT1 182 aaPredicted RBP15.72■□□□□ 0.11
CPSF1-208ENST00000532560 PPP1R9BQ96SB3 815 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 P2RY13Q9BPV8 354 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 DCLK3Q9C098 648 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 ZNF510Q9Y2H8 683 aa15.72■□□□□ 0.11
CPSF1-208ENST00000532560 HOXC11O43248 304 aaPredicted RBP15.71■□□□□ 0.11
CPSF1-208ENST00000532560 KLKB1P03952 638 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 FYNP06241 537 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 CORO1AP31146 461 aaKnown RBP15.71■□□□□ 0.11
CPSF1-208ENST00000532560 OPRD1P41143 372 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 EIF2DP41214 584 aaKnown RBP15.71■□□□□ 0.11
CPSF1-208ENST00000532560 CDR2Q01850 454 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 GRSF1Q12849 480 aaKnown RBP eCLIP15.71■□□□□ 0.11
CPSF1-208ENST00000532560 NNTQ13423 1086 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 TRIP4Q15650 581 aaPredicted RBP15.71■□□□□ 0.11
CPSF1-208ENST00000532560 TAF3Q5VWG9 929 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 FSTL4Q6MZW2 842 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms