RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PPP2R3BQ9Y5P8 575 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 PAPPA2Q9BXP8 1791 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 C22orf31O95567 290 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 CSH1P0DML2 217 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 CSH2P0DML3 217 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 RARBP10826 455 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 ESRRAP11474 423 aaPredicted RBP19.98■□□□□ 0.79
VPS28-213ENST00000530983 CCNFP41002 786 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 BST1Q10588 318 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 ANO7Q6IWH7 933 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 CCDC62Q6P9F0 684 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 FBXO16Q8IX29 292 aaPredicted RBP19.98■□□□□ 0.79
VPS28-213ENST00000530983 TEX9Q8N6V9 391 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 FAM172AQ8WUF8 416 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 MCUR1Q96AQ8 359 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 CPB2Q96IY4 423 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 C7orf26Q96N11 449 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 PPP1R16BQ96T49 567 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 RNPEPQ9H4A4 650 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 SMARCAD1Q9H4L7 1026 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 DPPA5A6NC42 116 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 DPYSL4O14531 572 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 HBP1O60381 514 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 APOEP02649 317 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 SLC26A2P50443 739 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 FAM187BQ17R55 369 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 THEMIS2Q5TEJ8 643 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 OLFML1Q6UWY5 402 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 UNC5AQ6ZN44 842 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 TEKT4Q8WW24 435 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 SNRNP25Q9BV90 132 aaKnown RBP19.97■□□□□ 0.79
VPS28-213ENST00000530983 CITO14578 2027 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 TNFAIP2Q03169 654 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 TMEM132DQ14C87 1099 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 RCN1Q15293 331 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 PMF1Q6P1K2 205 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 ZNF534Q76KX8 674 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 VPS52Q8N1B4 723 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 WDR60Q8WVS4 1066 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 DNAJC9Q8WXX5 260 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 USP6NLQ92738 828 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 KHSRPQ92945 711 aaKnown RBP eCLIP19.97■□□□□ 0.79
VPS28-213ENST00000530983 SLC13A1Q9BZW2 595 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 MMADHCQ9H3L0 296 aaPredicted RBP19.97■□□□□ 0.79
VPS28-213ENST00000530983 MKS1Q9NXB0 559 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 KCNK4Q9NYG8 393 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 SIRPGQ9P1W8 387 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 STOML1Q9UBI4 398 aa19.97■□□□□ 0.79
VPS28-213ENST00000530983 A0A087WZ62 844 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 HMX2A2RU54 273 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 CYB561D2O14569 222 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 CNMDO75829 334 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 KRT36O76013 467 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 ZBTB7AO95365 584 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 ACADSP16219 412 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 MAGEA3P43357 314 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 PHKA2P46019 1235 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 SESN3P58005 492 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 IGBP1P78318 339 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 OCRLQ01968 901 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 GOLGA7BQ2TAP0 167 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 CFAP61Q8NHU2 1237 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 E2F7Q96AV8 911 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 FDXACB1Q9BRP7 624 aaPredicted RBP19.96■□□□□ 0.79
VPS28-213ENST00000530983 MIS12Q9H081 205 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 ZNF395Q9H8N7 513 aaPredicted RBP19.96■□□□□ 0.79
VPS28-213ENST00000530983 NMRK1Q9NWW6 199 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 CAPN14A8MX76 684 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 I3L4J1 428 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 TMPRSS15P98073 1019 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 TEX44Q53QW1 395 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 LGSNQ5TDP6 509 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 TRMT10BQ6PF06 316 aaKnown RBP19.96■□□□□ 0.79
VPS28-213ENST00000530983 DLK2Q6UY11 383 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 MCUQ8NE86 351 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 LRRC39Q96DD0 335 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 NT5C1AQ9BXI3 368 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 KIAA1257Q9ULG3 409 aa19.96■□□□□ 0.79
VPS28-213ENST00000530983 OTOFQ9HC10 1997 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 METTL18O95568 372 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 ARF4P18085 180 aaPredicted RBP19.95■□□□□ 0.78
VPS28-213ENST00000530983 CHI3L2Q15782 390 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 TSNAXIP1Q2TAA8 658 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 PPP1R26Q5T8A7 1209 aaPredicted RBP19.95■□□□□ 0.78
VPS28-213ENST00000530983 GADL1Q6ZQY3 521 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 MPP5Q8N3R9 675 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 NRG4Q8WWG1 115 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 APBB2Q92870 758 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 ZNF333Q96JL9 665 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 SIGLEC10Q96LC7 697 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 TBCBQ99426 244 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 ZNF670Q9BS34 389 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.95■□□□□ 0.78
VPS28-213ENST00000530983 ITGA11Q9UKX5 1188 aa19.95■□□□□ 0.78
VPS28-213ENST00000530983 CCDC195A0A1B0GUA6 201 aa19.94■□□□□ 0.78
VPS28-213ENST00000530983 MDM4O15151 490 aa19.94■□□□□ 0.78
VPS28-213ENST00000530983 SDC4P31431 198 aa19.94■□□□□ 0.78
VPS28-213ENST00000530983 TUBP50607 506 aa19.94■□□□□ 0.78
VPS28-213ENST00000530983 PPP6R3Q5H9R7 873 aaPredicted RBP19.94■□□□□ 0.78
VPS28-213ENST00000530983 TTC30AQ86WT1 665 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms