RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 SCD5Q86SK9 330 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 TADA2BQ86TJ2 420 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 CHPFQ8IZ52 775 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 OLIG1Q8TAK6 271 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 TATDN2Q93075 761 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 TMEM176AQ96HP8 235 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 ACOX2Q99424 681 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 TSG101Q99816 390 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 LSM14BQ9BX40 385 aaKnown RBP13.68□□□□□ -0.22
CPSF1-204ENST00000529288 CISHQ9NSE2 258 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.68□□□□□ -0.22
CPSF1-204ENST00000529288 RMND1Q9NWS8 449 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 RAB20Q9NX57 234 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 MBD1Q9UIS9 605 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-204ENST00000529288 NCOR2Q9Y618 2525 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 ATXN2Q99700 1313 aaKnown RBP13.67□□□□□ -0.22
CPSF1-204ENST00000529288 PTPRDP23468 1912 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 LNP1A1A4G5 178 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 TM4SF5O14894 197 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 GREM1O60565 184 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 KCNK5O95279 499 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 PTGER3P43115 390 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 MAPK8P45983 427 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 DGKGP49619 791 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 NOVA1P51513 510 aaKnown RBP13.67□□□□□ -0.22
CPSF1-204ENST00000529288 IRX4P78413 519 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 LRMPQ12912 555 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 ZCWPW2Q504Y3 356 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 RSRC2Q7L4I2 434 aaKnown RBP13.67□□□□□ -0.22
CPSF1-204ENST00000529288 FBXL13Q8NEE6 735 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 ERCC4Q92889 916 aaPredicted RBP13.67□□□□□ -0.22
CPSF1-204ENST00000529288 ARID3AQ99856 593 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 PNPLA8Q9NP80 782 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 TMEM9BQ9NQ34 198 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 RAD54BQ9Y620 910 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 SDK1Q7Z5N4 2213 aa13.67□□□□□ -0.22
CPSF1-204ENST00000529288 SLC12A8A0AV02 714 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 PRRT4C9JH25 899 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 STC2O76061 302 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 CFIP05156 583 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 CHRM1P11229 460 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-204ENST00000529288 CD19P15391 556 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 GABRG2P18507 467 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 PRCPP42785 496 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 PSEN1P49768 467 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 SLC8A3P57103 927 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 RPL6Q02878 288 aaKnown RBP13.66□□□□□ -0.22
CPSF1-204ENST00000529288 ENPEPQ07075 957 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 GOLGA7BQ2TAP0 167 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 EDRF1Q3B7T1 1238 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 MAP7D1Q3KQU3 841 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 TRIM61Q5EBN2 209 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 LYSMD4Q5XG99 296 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 ISM2Q6H9L7 571 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 SLC4A11Q8NBS3 891 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 KCNV2Q8TDN2 545 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 NDRG1Q92597 394 aaKnown RBP13.66□□□□□ -0.22
CPSF1-204ENST00000529288 NUSAP1Q9BXS6 441 aaKnown RBP13.66□□□□□ -0.22
CPSF1-204ENST00000529288 CACNA2D2Q9NY47 1150 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 CALCOCO1Q9P1Z2 691 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 ANGPTL2Q9UKU9 493 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 HCN2Q9UL51 889 aa13.66□□□□□ -0.22
CPSF1-204ENST00000529288 HELZP42694 1942 aaKnown RBP13.66□□□□□ -0.22
CPSF1-204ENST00000529288 GIPC1O14908 333 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 CACNG3O60359 315 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 SMC2O95347 1197 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 ITPKAP23677 461 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 CORO1AP31146 461 aaKnown RBP13.65□□□□□ -0.22
CPSF1-204ENST00000529288 TKTL1P51854 596 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 RAD23BP54727 409 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 YWHAGP61981 247 aaKnown RBP eCLIP13.65□□□□□ -0.22
CPSF1-204ENST00000529288 CBWD6Q4V339 395 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 CBWD3Q5JTY5 395 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 CBWD5Q5RIA9 395 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 ZNF658Q5TYW1 1059 aaPredicted RBP13.65□□□□□ -0.22
CPSF1-204ENST00000529288 ANKRD40Q6AI12 368 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 KIAA1211LQ6NV74 962 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 KIAA1324Q6UXG2 1013 aaKnown RBP13.65□□□□□ -0.22
CPSF1-204ENST00000529288 CCDC186Q7Z3E2 898 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 PIGZQ86VD9 579 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 TTC39CQ8N584 583 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 IPO4Q8TEX9 1081 aaKnown RBP13.65□□□□□ -0.22
CPSF1-204ENST00000529288 SMARCE1Q969G3 411 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 CDK5RAP1Q96SZ6 601 aaKnown RBP13.65□□□□□ -0.22
CPSF1-204ENST00000529288 DUSP9Q99956 384 aaKnown RBP13.65□□□□□ -0.22
CPSF1-204ENST00000529288 GTPBP2Q9BX10 602 aaKnown RBP13.65□□□□□ -0.22
CPSF1-204ENST00000529288 SLC6A17Q9H1V8 727 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 FSCN3Q9NQT6 498 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 TMEM74BQ9NUR3 256 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 STRIP2Q9ULQ0 834 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 CYP8B1Q9UNU6 501 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 USP3Q9Y6I4 520 aa13.65□□□□□ -0.22
CPSF1-204ENST00000529288 A0A1W2PQF6 199 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 TRIM49BA6NDI0 452 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 WASH3PC4AMC7 463 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 AP5Z1O43299 807 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 KRT37O76014 449 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 KLKB1P03952 638 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 CISD3P0C7P0 127 aa13.64□□□□□ -0.23
CPSF1-204ENST00000529288 ATXN3P54252 364 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms