RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ALOXE3Q9BYJ1 711 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 TWSG1Q9GZX9 223 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 ELAC1Q9H777 363 aaKnown RBP3.7□□□□□ -1.82
CD44-229ENST00000528672 CXorf36Q9H7Y0 433 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 CHODLQ9H9P2 273 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 NOD2Q9HC29 1040 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 DNMT3BQ9UBC3 853 aaKnown RBP3.7□□□□□ -1.82
CD44-229ENST00000528672 DKK3Q9UBP4 350 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 SERTAD3Q9UJW9 196 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 ASAP1Q9ULH1 1129 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 DAPP1Q9UN19 280 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 ARHGAP26Q9UNA1 814 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 RAD54BQ9Y620 910 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 CDY1Q9Y6F8 540 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 LMTK3Q96Q04 1460 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 RPGRIP1LQ68CZ1 1315 aa3.7□□□□□ -1.82
CD44-229ENST00000528672 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 PNMA6EA0A0J9YXQ4 647 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 MARCH11A6NNE9 402 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 EFCAB8A8MWE9 144 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 ADM5C9JUS6 153 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 E7EVH7 732 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 J3KTA2 159 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 TOR1BO14657 336 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 PPM1DO15297 605 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 ZSCAN9O15535 394 aaPredicted RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 NARSO43776 548 aaKnown RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 GFPT2O94808 682 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 ZNF202O95125 648 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 CFIP05156 583 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 PPP3CBP16298 524 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 SCP2P22307 547 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 COPB2P35606 906 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 GCLCP48506 637 aaPredicted RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 PXNP49023 591 aaPredicted RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 SEC24CP53992 1094 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 CLNS1AP54105 237 aaKnown RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 PRKAG1P54619 331 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 CASP6P55212 293 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 ZNF844Q08AG5 666 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 GPS1Q13098 491 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 ANKRD1Q15327 319 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 BTBD16Q32M84 506 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 BEAN1Q3B7T3 259 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 LSM12Q3MHD2 195 aaKnown RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 SLC45A4Q5BKX6 768 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 MAP3K21Q5TCX8 1036 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 ARHGAP40Q5TG30 622 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 ZKSCAN2Q63HK3 967 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 C16orf54Q6UWD8 224 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 DPY19L3Q6ZPD9 716 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 RHOUQ7L0Q8 258 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 GET4Q7L5D6 327 aaPredicted RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 FASTKD5Q7L8L6 764 aaKnown RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 ANKS1BQ7Z6G8 1248 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 SPARTQ8N0X7 666 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 POC1BQ8TC44 478 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 ABHD5Q8WTS1 349 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 CPT1BQ92523 772 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 MED15Q96RN5 788 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 TWNKQ96RR1 684 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 CHCHD6Q9BRQ6 235 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 GPR63Q9BZJ6 419 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 PAIP1Q9H074 479 aaKnown RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 VPS16Q9H269 839 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 UNKLQ9H9P5 680 aaKnown RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 GBA2Q9HCG7 927 aaPredicted RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 PI4KBQ9UBF8 816 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 DKK2Q9UBU2 259 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 PRDM4Q9UKN5 801 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 C19orf53Q9UNZ5 99 aaPredicted RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 SSX2IPQ9Y2D8 614 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 RRP7AQ9Y3A4 280 aaKnown RBP3.69□□□□□ -1.82
CD44-229ENST00000528672 KAT6BQ8WYB5 2073 aa3.69□□□□□ -1.82
CD44-229ENST00000528672 A0A087X0M5 115 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 A0A1B0GX30 115 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 A0A1W2PPH5 198 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 OR2W5A6NFC9 320 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 F5H0A9 414 aaPredicted RBP3.68□□□□□ -1.82
CD44-229ENST00000528672 DHX16O60231 1041 aaKnown RBP3.68□□□□□ -1.82
CD44-229ENST00000528672 SRGAP2O75044 1071 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 ZBED4O75132 1171 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 PPP6R2O75170 966 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 CSF1RP07333 972 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 ELFN1P0C7U0 828 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 ARP10275 920 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 CLCN2P51788 898 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 DGKEP52429 567 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 RBM5P52756 815 aaKnown RBP eCLIP3.68□□□□□ -1.82
CD44-229ENST00000528672 LOXL3P58215 753 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 KRT32Q14532 448 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 GRM4Q14833 912 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 RBM20Q5T481 1227 aaKnown RBP3.68□□□□□ -1.82
CD44-229ENST00000528672 HAUS3Q68CZ6 603 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 ABLIM2Q6H8Q1 611 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 ACAD10Q6JQN1 1059 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 BBS12Q6ZW61 710 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 NEK10Q6ZWH5 1172 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 ZNF276Q8N554 614 aa3.68□□□□□ -1.82
CD44-229ENST00000528672 DNAJB14Q8TBM8 379 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms