RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.3■□□□□ 0.2
CAPN1-213ENST00000527897 SLC12A8A0AV02 714 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 TBC1D3BA6NDS4 549 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.29■□□□□ 0.2
CAPN1-213ENST00000527897 PES1O00541 588 aaKnown RBP16.29■□□□□ 0.2
CAPN1-213ENST00000527897 STC2O76061 302 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 SLC9A1P19634 815 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 COG7P83436 770 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 ARHGAP44Q17R89 818 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 GBP6Q6ZN66 633 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 WDR5BQ86VZ2 330 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 IRF2BP1Q8IU81 584 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 USP33Q8TEY7 942 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 RNF139Q8WU17 664 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 EDEM1Q92611 657 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 ZSWIM1Q9BR11 485 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 ZDHHC4Q9NPG8 344 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 DNAJC17Q9NVM6 304 aaKnown RBP16.29■□□□□ 0.2
CAPN1-213ENST00000527897 DEC1Q9P2X7 70 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 GMEB2Q9UKD1 530 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 ZNF292O60281 2723 aa16.29■□□□□ 0.2
CAPN1-213ENST00000527897 GPR179Q6PRD1 2367 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 DMXL1Q9Y485 3027 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 HOXC11O43248 304 aaPredicted RBP16.28■□□□□ 0.2
CAPN1-213ENST00000527897 GREM1O60565 184 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 TULP3O75386 442 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 LETM1O95202 739 aaPredicted RBP16.28■□□□□ 0.2
CAPN1-213ENST00000527897 PRKCSHP14314 528 aaPredicted RBP16.28■□□□□ 0.2
CAPN1-213ENST00000527897 TYRP14679 529 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 CORO1AP31146 461 aaKnown RBP16.28■□□□□ 0.2
CAPN1-213ENST00000527897 EIF2DP41214 584 aaKnown RBP16.28■□□□□ 0.2
CAPN1-213ENST00000527897 GRIA2P42262 883 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 MFAP3P55082 362 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 APBA1Q02410 837 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 STILQ15468 1287 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 CNGA2Q16280 664 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 EXOC3L4Q17RC7 722 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 EMC10Q5UCC4 262 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 PMF1Q6P1K2 205 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 TRIM65Q6PJ69 517 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 CLEC17AQ6ZS10 378 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 SYT13Q7L8C5 426 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.28■□□□□ 0.2
CAPN1-213ENST00000527897 FAM114A1Q8IWE2 563 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 XPO6Q96QU8 1125 aaKnown RBP16.28■□□□□ 0.2
CAPN1-213ENST00000527897 MIS12Q9H081 205 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 ST7Q9NRC1 585 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 PLK2Q9NYY3 685 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 GVINP1Q7Z2Y8 2422 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 OTOGLQ3ZCN5 2332 aa16.28■□□□□ 0.2
CAPN1-213ENST00000527897 YJEFN3A6XGL0 299 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 E7ENQ6 273 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 GOLGA6L22H0YM25 854 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 TRIM24O15164 1050 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 THAP12O43422 761 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 KLF8O95600 359 aaPredicted RBP16.27■□□□□ 0.2
CAPN1-213ENST00000527897 APBB3O95704 486 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 CNR2P34972 360 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 DGKEP52429 567 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 PREPLQ4J6C6 727 aaPredicted RBP16.27■□□□□ 0.2
CAPN1-213ENST00000527897 PKDCCQ504Y2 493 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 C10orf76Q5T2E6 689 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 BSPRYQ5W0U4 402 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 PM20D1Q6GTS8 502 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 GRAMD4Q6IC98 578 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 BHLHA9Q7RTU4 235 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 DENND1CQ8IV53 801 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 ALLCQ8N6M5 410 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 TXNDC5Q8NBS9 432 aaKnown RBP16.27■□□□□ 0.2
CAPN1-213ENST00000527897 TSTD1Q8NFU3 115 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 KCTD13Q8WZ19 329 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 THAP9Q9H5L6 903 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 CNGB3Q9NQW8 809 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 WDR35Q9P2L0 1181 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 SFMBT1Q9UHJ3 866 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 USP18Q9UMW8 372 aa16.27■□□□□ 0.2
CAPN1-213ENST00000527897 AXIN1O15169 862 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 RPP40O75818 363 aaKnown RBP16.26■□□□□ 0.19
CAPN1-213ENST00000527897 KLKB1P03952 638 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 GNA15P30679 374 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 HOXA6P31267 233 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 ZNF132P52740 706 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 DAOAP59103 153 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 MRPS21P82921 87 aaKnown RBP16.26■□□□□ 0.19
CAPN1-213ENST00000527897 MAN2A1Q16706 1144 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 LAIR1Q6GTX8 287 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 Q6ZNB5 142 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 NUDT18Q6ZVK8 323 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 ENOSF1Q7L5Y1 443 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 FMNL3Q8IVF7 1028 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 ETFBKMTQ8IXQ9 262 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 ZNF276Q8N554 614 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 CAMKK1Q8N5S9 505 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 GPT2Q8TD30 523 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 CLEC4CQ8WTT0 213 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 SLC35F5Q8WV83 523 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 GOLGA1Q92805 767 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 TPSD1Q9BZJ3 242 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 DCLK3Q9C098 648 aa16.26■□□□□ 0.19
CAPN1-213ENST00000527897 ACP6Q9NPH0 428 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms