RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 FAM186BQ8IYM0 893 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 METTL13Q8N6R0 699 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 ZNF655Q8N720 491 aaPredicted RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 LSM14AQ8ND56 463 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 VPS37AQ8NEZ2 397 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 DEPTORQ8TB45 409 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 LMBR1Q8WVP7 490 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 PRPF31Q8WWY3 499 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 HVCN1Q96D96 273 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 SAAL1Q96ER3 474 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 BICD1Q96G01 975 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 TCTN2Q96GX1 697 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 ZBTB45Q96K62 511 aaPredicted RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 FAM84AQ96KN4 292 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 LRGUKQ96M69 825 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 ERGIC2Q96RQ1 377 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 C16orf70Q9BSU1 422 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 DUSP23Q9BVJ7 150 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 YIPF2Q9BWQ6 316 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 LSM14BQ9BX40 385 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 CDIP1Q9H305 208 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 NDST4Q9H3R1 872 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 ST6GALNAC4Q9H4F1 302 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 C17orf75Q9HAS0 396 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 PRDM5Q9NQX1 630 aaPredicted RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 TOPORSQ9NS56 1045 aaPredicted RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 FAM207AQ9NSI2 230 aaPredicted RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 DMAC2Q9NW81 257 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 RNF186Q9NXI6 227 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 ERAP1Q9NZ08 941 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 HSPBP1Q9NZL4 362 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 ARHGAP28Q9P2N2 729 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 SUCLA2Q9P2R7 463 aaPredicted RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 ZNF215Q9UL58 517 aaPredicted RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 EXOC7Q9UPT5 735 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 SIK3Q9Y2K2 1263 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.47□□□□□ -1.69
CD44-226ENST00000527889 MRFAP1Q9Y605 127 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 CFAP47Q6ZTR5 3102 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 DOCK4Q8N1I0 1966 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 MYOFQ9NZM1 2061 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 ATG2AQ2TAZ0 1938 aa4.46□□□□□ -1.69
CD44-226ENST00000527889 MIA3Q5JRA6 1907 aa4.46□□□□□ -1.69
CD44-226ENST00000527889 ANKRD11Q6UB99 2663 aaPredicted RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 ZDBF2Q9HCK1 2354 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 OBSL1O75147 1896 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 COL1A2P08123 1366 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 IGKV6-21A0A0C4DH24 114 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 A0A1W2PQC6 194 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 DYTNA2CJ06 578 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 USP27XA6NNY8 438 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 PRR33A8MZF0 331 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 K7ERI5 159 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 XPOTO43592 962 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 CSDE1O75534 798 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 NOL4O94818 638 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 IL33O95760 270 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 PGK1P00558 417 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 AFPP02771 609 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 PRKCBP05771 671 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 TPM1P09493 284 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 SMIM10L2AP0DMW4 78 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 SMIM10L2BP0DMW5 78 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 HARSP12081 509 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 ACTN1P12814 892 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 CYBAP13498 195 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 PAMP19021 973 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 TRIM21P19474 475 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 SLC9A1P19634 815 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 KLRC1P26715 233 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 TPP2P29144 1249 aaPredicted RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 SERPINB3P29508 390 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 CCND3P30281 292 aaPredicted RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 ADSSP30520 456 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 KRT9P35527 623 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 PSMC2P35998 433 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 NAMPTP43490 491 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 LIG4P49917 911 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 SLC26A2P50443 739 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 SCAND1P57086 179 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 PHC1P78364 1004 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 SMAD3P84022 425 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 TNK2Q07912 1038 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 CACNB2Q08289 660 aaPredicted RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 TRIM14Q14142 442 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 MTF1Q14872 753 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 ACAP1Q15027 740 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 SMAD2Q15796 467 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 PKN2Q16513 984 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 NFIL3Q16649 462 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 FSCN1Q16658 493 aaKnown RBP4.46□□□□□ -1.7
CD44-226ENST00000527889 KIAA0753Q2KHM9 967 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 CLEC16AQ2KHT3 1053 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 GRAMD1BQ3KR37 738 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 ZNF484Q5JVG2 852 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 MFSD14CQ5VZR4 134 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 MTHFD1LQ6UB35 978 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 PRR23CQ6ZRP0 262 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 LCA5Q86VQ0 697 aa4.46□□□□□ -1.7
CD44-226ENST00000527889 CBWD2Q8IUF1 395 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms