RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 COX16Q9P0S2 106 aa14.35□□□□□ -0.11
CD44-224ENST00000526669 CTTNBP2NLQ9P2B4 639 aa14.35□□□□□ -0.11
CD44-224ENST00000526669 SFMBT1Q9UHJ3 866 aa14.35□□□□□ -0.11
CD44-224ENST00000526669 XIRP2A4UGR9 3374 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 SIGLEC16A6NMB1 481 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 COCHO43405 550 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 OAS1P00973 400 aaKnown RBP14.34□□□□□ -0.11
CD44-224ENST00000526669 CYP1A2P05177 515 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 CKMP06732 381 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 HMBSP08397 361 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 IRF1P10914 325 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 IL9P15248 144 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 TFE3P19532 575 aaPredicted RBP14.34□□□□□ -0.11
CD44-224ENST00000526669 SCNN1AP37088 669 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 PPP3CCP48454 512 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 MAMLD1Q13495 774 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 CDO1Q16878 200 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 LEXMQ3ZCV2 418 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 PPP1R15BQ5SWA1 713 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 C10orf76Q5T2E6 689 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 SNX30Q5VWJ9 437 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 PTCRAQ6ISU1 281 aaPredicted RBP14.34□□□□□ -0.11
CD44-224ENST00000526669 TAC4Q86UU9 113 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 ZNF564Q8TBZ8 553 aaPredicted RBP14.34□□□□□ -0.11
CD44-224ENST00000526669 RXFP2Q8WXD0 754 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 FGF13Q92913 245 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 CFAP57Q96MR6 1250 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 NECTIN4Q96NY8 510 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 SLC2A13Q96QE2 648 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 SLC46A2Q9BY10 475 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 NACA2Q9H009 215 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 TASP1Q9H6P5 420 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 PARVAQ9NVD7 372 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 SMPD4Q9NXE4 827 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.34□□□□□ -0.11
CD44-224ENST00000526669 CLIC5Q9NZA1 410 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 TMEM59LQ9UK28 342 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 ADGRG1Q9Y653 693 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 SCINQ9Y6U3 715 aa14.34□□□□□ -0.11
CD44-224ENST00000526669 NUP205Q92621 2012 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 TRAV19A0A0A6YYK7 116 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 MSI1O43347 362 aaKnown RBP14.33□□□□□ -0.12
CD44-224ENST00000526669 GLI1P08151 1106 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 PDGFRAP16234 1089 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 HDCP19113 662 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 GPD1P21695 349 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 RFC1P35251 1148 aaPredicted RBP14.33□□□□□ -0.12
CD44-224ENST00000526669 SULT1E1P49888 294 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 VAV2P52735 878 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 KRT83P78385 493 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 OGDHQ02218 1023 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 C15orf59Q2T9L4 293 aaPredicted RBP14.33□□□□□ -0.12
CD44-224ENST00000526669 RAB6CQ53S08 254 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 MIB1Q86YT6 1006 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 DQX1Q8TE96 717 aaKnown RBP14.33□□□□□ -0.12
CD44-224ENST00000526669 TBCBQ99426 244 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 ADAM33Q9BZ11 813 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 LACRTQ9GZZ8 138 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 RAB6CQ9H0N0 254 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 FAM204AQ9H8W3 233 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 OSGEPQ9NPF4 335 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 LUC7LQ9NQ29 371 aaKnown RBP14.33□□□□□ -0.12
CD44-224ENST00000526669 THEGQ9P2T0 379 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 TRIM10Q9UDY6 481 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 ANAPC7Q9UJX3 599 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 PYCARDQ9ULZ3 195 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 CPQQ9Y646 472 aa14.33□□□□□ -0.12
CD44-224ENST00000526669 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.33□□□□□ -0.12
CD44-224ENST00000526669 ATG2BQ96BY7 2078 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 SLC12A8A0AV02 714 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 C2CD4BA6NLJ0 364 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 TMEM110-MUSTN1A8MSY1 372 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 SCAMP3O14828 347 aaKnown RBP14.32□□□□□ -0.12
CD44-224ENST00000526669 CCP110O43303 1012 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 PRAMEF12O95522 483 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 DDX6P26196 483 aaKnown RBP eCLIP14.32□□□□□ -0.12
CD44-224ENST00000526669 NOS2P35228 1153 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 ATP5C1P36542 298 aaKnown RBP14.32□□□□□ -0.12
CD44-224ENST00000526669 MATKP42679 507 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 TUBP50607 506 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 KCNQ1P51787 676 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 ATXN1P54253 815 aaKnown RBP14.32□□□□□ -0.12
CD44-224ENST00000526669 ATP11AP98196 1134 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 OTUD1Q5VV17 481 aaPredicted RBP14.32□□□□□ -0.12
CD44-224ENST00000526669 MSANTD2Q6P1R3 559 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 CMTM8Q8IZV2 173 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 ZSCAN18Q8TBC5 510 aaPredicted RBP14.32□□□□□ -0.12
CD44-224ENST00000526669 SLC35G2Q8TBE7 412 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 WBP2Q969T9 261 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 DDX23Q9BUQ8 820 aaKnown RBP14.32□□□□□ -0.12
CD44-224ENST00000526669 MRPL47Q9HD33 250 aaKnown RBP14.32□□□□□ -0.12
CD44-224ENST00000526669 GKN1Q9NS71 199 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 OLA1Q9NTK5 396 aaKnown RBP14.32□□□□□ -0.12
CD44-224ENST00000526669 MARCH2Q9P0N8 246 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 CDH7Q9ULB5 785 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 INTUQ9ULD6 942 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 CCL26Q9Y258 94 aa14.32□□□□□ -0.12
CD44-224ENST00000526669 SHROOM3Q8TF72 1996 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 C2CD4DB7Z1M9 353 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 BUB1O43683 1085 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms