RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ATG16L1Q676U5 607 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 TAF2Q6P1X5 1199 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 CRLF3Q8IUI8 442 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 LRRC52Q8N7C0 313 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 COLGALT1Q8NBJ5 622 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 PRCCQ92733 491 aaPredicted RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 ALKBH8Q96BT7 664 aaKnown RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 PIWIL1Q96J94 861 aaKnown RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 NRDE2Q9H7Z3 1164 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 MANSC1Q9H8J5 431 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 SLCO1B3Q9NPD5 702 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 TLK1Q9UKI8 766 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 LRFN2Q9ULH4 789 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 COL1A2P08123 1366 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 ARHGAP42A6NI28 874 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 C2CD4BA6NLJ0 364 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 USP12O75317 370 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 SLC4A1P02730 911 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 AXLP30530 894 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 ERFP50548 548 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 CES3Q6UWW8 571 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 AGR3Q8TD06 166 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 TMEM174Q8WUU8 243 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 LGMNQ99538 433 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 BCO2Q9BYV7 579 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 C12orf65Q9H3J6 166 aaKnown RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 PPCSQ9HAB8 311 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 NUDT5Q9UKK9 219 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 ST3GAL5Q9UNP4 418 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 FNDC3AQ9Y2H6 1198 aaKnown RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 NR2E3Q9Y5X4 410 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 USH1CQ9Y6N9 552 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 SMIM35A0A1B0GVV1 85 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 ZWINTO95229 277 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 TGM2P21980 687 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 OR1G1P47890 313 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 KLF1Q13351 362 aaPredicted RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 CA9Q16790 459 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 GEN1Q17RS7 908 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 RNASEH2BQ5TBB1 312 aaKnown RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 RASSF3Q86WH2 238 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 TTC30AQ86WT1 665 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 PLD5Q8N7P1 536 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 CKAP2Q8WWK9 683 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 PTPRHQ9HD43 1115 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 ABI2Q9NYB9 513 aaPredicted RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 LOC102724159A0A0B4J2E5 919 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 MANSC4A6NHS7 340 aaPredicted RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 IGF2BP3O00425 579 aaKnown RBP eCLIP10.51□□□□□ -0.73
MCF2-209ENST00000520602 GPR182O15218 404 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 SNX3O60493 162 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 SPAG6O75602 509 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 HMBSP08397 361 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 NAA25Q14CX7 972 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 PWP2Q15269 919 aaKnown RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 SOWAHAQ2M3V2 549 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 TTC39BQ5VTQ0 682 aaPredicted RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 NXNQ6DKJ4 435 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 MFSD5Q6N075 450 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 ANKS1BQ7Z6G8 1248 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 ZDHHC17Q8IUH5 632 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 HTR3CQ8WXA8 447 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 SLCO2A1Q92959 643 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 ZNF669Q96BR6 464 aaPredicted RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 MCRS1Q96EZ8 462 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 CELF6Q96J87 481 aaKnown RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 ZMAT2Q96NC0 199 aaKnown RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 MTG1Q9BT17 334 aaPredicted RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 RPS6KL1Q9Y6S9 549 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 ARFGEF1Q9Y6D6 1849 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 CIB2O75838 187 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 CSPG5O95196 566 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 POU5F1BQ06416 359 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 ZNF252P-AS1Q0IIN9 211 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 ITIH4Q14624 930 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 LDLRAD1Q5T700 205 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 SLC26A11Q86WA9 606 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 SNX27Q96L92 541 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 XAB2Q9HCS7 855 aaKnown RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 ETNK2Q9NVF9 386 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 ARHGEF37A1IGU5 675 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 HAUS5O94927 633 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 NPR3P17342 541 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 BDNFP23560 247 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 TARSP26639 723 aaKnown RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 SLC8A1P32418 973 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 CRYBB1P53674 252 aaPredicted RBP10.51□□□□□ -0.73
MCF2-209ENST00000520602 RAB6CQ53S08 254 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 ZNF618Q5T7W0 954 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 OLFML2BQ68BL8 750 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 GLB1LQ6UWU2 654 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 TRABD2AQ86V40 505 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 PYROXD2Q8N2H3 581 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 SMC1BQ8NDV3 1235 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 SLC35B2Q8TB61 432 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 SPOCK2Q92563 424 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 FSD1LQ9BXM9 530 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 RAB6CQ9H0N0 254 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 AAASQ9NRG9 546 aa10.51□□□□□ -0.73
MCF2-209ENST00000520602 CNTN6Q9UQ52 1028 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms