RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 OSBPL5Q9H0X9 879 aaPredicted RBP8.06□□□□□ -1.12
SDCBP-208ENST00000520228 DHX36Q9H2U1 1008 aaKnown RBP8.06□□□□□ -1.12
SDCBP-208ENST00000520228 ZNF112Q9UJU3 913 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 AGAP1Q9UPQ3 857 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 RFX7Q2KHR2 1363 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 ARAP2Q8WZ64 1704 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 PAPPA2Q9BXP8 1791 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 A0A1W2PPL8 197 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 CFAP69A5D8W1 941 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 ZNF785A8K8V0 405 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 PRRG2O14669 202 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 PEX11BO96011 259 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 SPATA31D3P0C874 917 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 FGFR4P22455 802 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 ADD2P35612 726 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 INHBEP58166 350 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 NUCB1Q02818 461 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 SREBF2Q12772 1141 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 HABP2Q14520 560 aaPredicted RBP8.05□□□□□ -1.12
SDCBP-208ENST00000520228 CRB2Q5IJ48 1285 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 MIIPQ5JXC2 388 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 B3GNTL1Q67FW5 361 aaPredicted RBP8.05□□□□□ -1.12
SDCBP-208ENST00000520228 SPATA31D4Q6ZUB0 917 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 CHD1LQ86WJ1 897 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 ERO1BQ86YB8 467 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 KBTBD3Q8NAB2 608 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 SLC17A8Q8NDX2 589 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 KBTBD7Q8WVZ9 684 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 OPTNQ96CV9 577 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 ZSWIM1Q9BR11 485 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 RIOK1Q9BRS2 568 aaKnown RBP8.05□□□□□ -1.12
SDCBP-208ENST00000520228 DPH1Q9BZG8 443 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 CRNKL1Q9BZJ0 848 aaKnown RBP8.05□□□□□ -1.12
SDCBP-208ENST00000520228 IMPG2Q9BZV3 1241 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 PI4KBQ9UBF8 816 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 USP25Q9UHP3 1055 aa8.05□□□□□ -1.12
SDCBP-208ENST00000520228 PCNTO95613 3336 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 FLT1P17948 1338 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 MANSC4A6NHS7 340 aaPredicted RBP8.04□□□□□ -1.12
SDCBP-208ENST00000520228 RNASET2O00584 256 aaKnown RBP8.04□□□□□ -1.12
SDCBP-208ENST00000520228 DNAJB5O75953 348 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 NCR1O76036 304 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 MBD4O95243 580 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 CHEK2O96017 543 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 KITP10721 976 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 MYF5P13349 255 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 TM4SF4P48230 202 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 LBX1P52954 281 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 PDE1AP54750 535 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 POU6F2P78424 691 aaPredicted RBP8.04□□□□□ -1.12
SDCBP-208ENST00000520228 FOXE3Q13461 319 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 BEAN1Q3B7T3 259 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 PPP1R32Q7Z5V6 425 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 SPRED1Q7Z699 444 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 FOXP4Q8IVH2 680 aaPredicted RBP8.04□□□□□ -1.12
SDCBP-208ENST00000520228 CFAP52Q8N1V2 620 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 TMEM132CQ8N3T6 1108 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 ZNF276Q8N554 614 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 PJA1Q8NG27 643 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 LRIG1Q96JA1 1093 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 MED15Q96RN5 788 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 P2RX7Q99572 595 aaKnown RBP8.04□□□□□ -1.12
SDCBP-208ENST00000520228 TINAGL1Q9GZM7 467 aaPredicted RBP8.04□□□□□ -1.12
SDCBP-208ENST00000520228 AKIP1Q9NQ31 210 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 RNF186Q9NXI6 227 aa8.04□□□□□ -1.12
SDCBP-208ENST00000520228 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.04□□□□□ -1.12
SDCBP-208ENST00000520228 HERC5Q9UII4 1024 aaKnown RBP8.04□□□□□ -1.12
SDCBP-208ENST00000520228 SALL3Q9BXA9 1300 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 RNF113AO15541 343 aaKnown RBP8.03□□□□□ -1.12
SDCBP-208ENST00000520228 HLA-DOAP06340 250 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 ZFYP08048 801 aaPredicted RBP8.03□□□□□ -1.12
SDCBP-208ENST00000520228 HSPA8P11142 646 aaKnown RBP8.03□□□□□ -1.12
SDCBP-208ENST00000520228 EN2P19622 333 aaPredicted RBP8.03□□□□□ -1.12
SDCBP-208ENST00000520228 PEX2P28328 305 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 ZNF135P52742 658 aaPredicted RBP8.03□□□□□ -1.12
SDCBP-208ENST00000520228 PPATQ06203 517 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 POLD3Q15054 466 aaPredicted RBP8.03□□□□□ -1.12
SDCBP-208ENST00000520228 USP37Q86T82 979 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 SCYL3Q8IZE3 742 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 LCORLQ8N3X6 602 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 SLC25A43Q8WUT9 341 aaPredicted RBP8.03□□□□□ -1.12
SDCBP-208ENST00000520228 APIPQ96GX9 242 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 PLEKHG4BQ96PX9 1271 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 MRPS18AQ9NVS2 196 aaKnown RBP8.03□□□□□ -1.12
SDCBP-208ENST00000520228 SAGE1Q9NXZ1 904 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 ETAA1Q9NY74 926 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 CTTNBP2NLQ9P2B4 639 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 TPCN1Q9ULQ1 816 aa8.03□□□□□ -1.12
SDCBP-208ENST00000520228 COL2A1P02458 1487 aaPredicted RBP8.02□□□□□ -1.13
SDCBP-208ENST00000520228 TBX3O15119 743 aa8.02□□□□□ -1.13
SDCBP-208ENST00000520228 KRT18P05783 430 aaKnown RBP8.02□□□□□ -1.13
SDCBP-208ENST00000520228 MYL1P05976 194 aa8.02□□□□□ -1.13
SDCBP-208ENST00000520228 CETPP11597 493 aa8.02□□□□□ -1.13
SDCBP-208ENST00000520228 FDXRP22570 491 aa8.02□□□□□ -1.13
SDCBP-208ENST00000520228 BUD31P41223 144 aaPredicted RBP8.02□□□□□ -1.13
SDCBP-208ENST00000520228 HSD11B2P80365 405 aa8.02□□□□□ -1.13
SDCBP-208ENST00000520228 DGCR2P98153 550 aa8.02□□□□□ -1.13
SDCBP-208ENST00000520228 PPIL2Q13356 520 aa8.02□□□□□ -1.13
SDCBP-208ENST00000520228 SLC4A8Q2Y0W8 1093 aa8.02□□□□□ -1.13
SDCBP-208ENST00000520228 MAP9Q49MG5 647 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms