RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 OSBPL6Q9BZF3 934 aa5.96□□□□□ -1.46
NUP54-218ENST00000515460 DHX36Q9H2U1 1008 aaKnown RBP5.96□□□□□ -1.46
NUP54-218ENST00000515460 ZMAT4Q9H898 229 aa5.96□□□□□ -1.46
NUP54-218ENST00000515460 AS3MTQ9HBK9 375 aa5.96□□□□□ -1.46
NUP54-218ENST00000515460 IL23AQ9NPF7 189 aa5.96□□□□□ -1.46
NUP54-218ENST00000515460 AATFQ9NY61 560 aaKnown RBP eCLIP5.96□□□□□ -1.46
NUP54-218ENST00000515460 ODF2LQ9ULJ1 636 aa5.96□□□□□ -1.46
NUP54-218ENST00000515460 WDR37Q9Y2I8 494 aa5.96□□□□□ -1.46
NUP54-218ENST00000515460 GBF1Q92538 1859 aa5.96□□□□□ -1.46
NUP54-218ENST00000515460 ELP1O95163 1332 aa5.96□□□□□ -1.46
NUP54-218ENST00000515460 ATXN2Q99700 1313 aaKnown RBP5.96□□□□□ -1.46
NUP54-218ENST00000515460 UBE2QL1A1L167 161 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 ANKRD62A6NC57 917 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 C19orf81C9J6K1 198 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 CNMDO75829 334 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 TOX4O94842 621 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 GNAI2P04899 355 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 MYL1P05976 194 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 UQCRFS1P1P0C7P4 283 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 TRIM27P14373 513 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 XBP1P17861 261 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 TGM1P22735 817 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 CCND3P30281 292 aaPredicted RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 LSP1P33241 339 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 GCKP35557 465 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 PSMD7P51665 324 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 DYNLL1P63167 89 aaKnown RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 SLC25A3Q00325 362 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 ELAVL1Q15717 326 aaKnown RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 KIAA0753Q2KHM9 967 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 CCDC92Q53HC0 331 aaPredicted RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 RRP12Q5JTH9 1297 aaKnown RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 SFMBT2Q5VUG0 894 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 NAA16Q6N069 864 aaPredicted RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 FAM111BQ6SJ93 734 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 JAZF1Q86VZ6 243 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 MAPKAPK5Q8IW41 473 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 GPRC5AQ8NFJ5 357 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 ERMNQ8TAM6 284 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 FAM81AQ8TBF8 368 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 N4BP2L2Q92802 583 aaPredicted RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 ZG16BQ96DA0 208 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 SAAL1Q96ER3 474 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 RSRC1Q96IZ7 334 aaKnown RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 SCLT1Q96NL6 688 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 OSBPL9Q96SU4 736 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 TARS2Q9BW92 718 aaKnown RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 UBXN6Q9BZV1 441 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 RSPH9Q9H1X1 276 aaPredicted RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 PORCNQ9H237 461 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 GPR108Q9NPR9 543 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 PIH1D3Q9NQM4 214 aaKnown RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 EXOC1Q9NV70 894 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 TUBA8Q9NY65 449 aaPredicted RBP5.95□□□□□ -1.46
NUP54-218ENST00000515460 RGL1Q9NZL6 768 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 MSRAQ9UJ68 235 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 FLT1P17948 1338 aa5.95□□□□□ -1.46
NUP54-218ENST00000515460 WDFY3Q8IZQ1 3526 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 GOLGA6L9A6NEM1 432 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 RAMP2O60895 175 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 ERLIN2O94905 339 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 BAG3O95817 575 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 FESP07332 822 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 ASNSP08243 561 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 HNRNPLP14866 589 aaKnown RBP eCLIP5.94□□□□□ -1.46
NUP54-218ENST00000515460 H2AFXP16104 143 aaPredicted RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 KCNA5P22460 613 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 MAPK4P31152 587 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 LSSP48449 732 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 CCNHP51946 323 aaPredicted RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 RABGGTBP53611 331 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 ATXN1P54253 815 aaKnown RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 NANOS3P60323 173 aaKnown RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 IL2P60568 153 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 PHC1P78364 1004 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 ATP8B2P98198 1209 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 PURAQ00577 322 aaKnown RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 LAMB3Q13751 1172 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 LRRC41Q15345 812 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 TRIM60Q495X7 471 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 CCDC38Q502W7 563 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 SOWAHCQ53LP3 525 aaPredicted RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 CCDC158Q5M9N0 1113 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 TTC39AQ5SRH9 613 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 MFSD5Q6N075 450 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 TATDN1Q6P1N9 297 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 ATF7IPQ6VMQ6 1270 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 CATSPERGQ6ZRH7 1159 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 ZNF662Q6ZS27 426 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 GPR142Q7Z601 462 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 NOP9Q86U38 636 aaKnown RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 LRRC49Q8IUZ0 686 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 CCDC65Q8IXS2 484 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 CCDC170Q8IYT3 715 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 RNF168Q8IYW5 571 aaPredicted RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 C3orf20Q8ND61 904 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 VPS37AQ8NEZ2 397 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 SSH3Q8TE77 659 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 RSPH1Q8WYR4 309 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 LZICQ8WZA0 190 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms