RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 ZDHHC17Q8IUH5 632 aa21.15■□□□□ 0.98
USP53-208ENST00000514305 PASD1Q8IV76 773 aa21.15■□□□□ 0.98
USP53-208ENST00000514305 SPC24Q8NBT2 197 aa21.15■□□□□ 0.98
USP53-208ENST00000514305 ATRIPQ8WXE1 791 aa21.15■□□□□ 0.98
USP53-208ENST00000514305 FAM3CQ92520 227 aa21.15■□□□□ 0.98
USP53-208ENST00000514305 MRPS31Q92665 395 aaKnown RBP21.15■□□□□ 0.98
USP53-208ENST00000514305 PPP1R13BQ96KQ4 1090 aa21.15■□□□□ 0.98
USP53-208ENST00000514305 PANX2Q96RD6 677 aa21.15■□□□□ 0.98
USP53-208ENST00000514305 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.15■□□□□ 0.98
USP53-208ENST00000514305 ATXN3LQ9H3M9 355 aa21.15■□□□□ 0.98
USP53-208ENST00000514305 TLR8Q9NR97 1041 aaKnown RBP21.15■□□□□ 0.98
USP53-208ENST00000514305 PCDHGA2Q9Y5H1 932 aa21.15■□□□□ 0.98
USP53-208ENST00000514305 SOBPA7XYQ1 873 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 TNFRSF10BO14763 440 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 CALCAP01258 141 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 GZMAP12544 262 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 DDX6P26196 483 aaKnown RBP eCLIP21.14■□□□□ 0.97
USP53-208ENST00000514305 GABRR2P28476 465 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 TKTL1P51854 596 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 EMP3P54852 163 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 IFRD2Q12894 506 aaPredicted RBP21.14■□□□□ 0.97
USP53-208ENST00000514305 RAB41Q5JT25 222 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 TADA2BQ86TJ2 420 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 SCML4Q8N228 414 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 SLC20A1Q8WUM9 679 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 IRGQQ8WZA9 623 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 RUBCNQ92622 972 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 CCDC42Q96M95 316 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 CDK5RAP1Q96SZ6 601 aaKnown RBP21.14■□□□□ 0.97
USP53-208ENST00000514305 IL37Q9NZH6 218 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 STRIP2Q9ULQ0 834 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 SCML2Q9UQR0 700 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 SPTBN4Q9H254 2564 aa21.14■□□□□ 0.97
USP53-208ENST00000514305 NCANO14594 1321 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 HHLA1C9JL84 531 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 CHADO15335 359 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 ZBED1O96006 694 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 CYP1A1P04798 512 aaPredicted RBP21.13■□□□□ 0.97
USP53-208ENST00000514305 SKILP12757 684 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 PFKLP17858 780 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 ID4P47928 161 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 PDCLQ13371 301 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 PPP2R5DQ14738 602 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 STXBP5Q5T5C0 1151 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 GPR158Q5T848 1215 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 PMF1Q6P1K2 205 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 C1orf228Q6PIY5 440 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 GAREM2Q75VX8 874 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 TMEM110Q86TL2 294 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 MON1AQ86VX9 555 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 ARID3BQ8IVW6 561 aaPredicted RBP21.13■□□□□ 0.97
USP53-208ENST00000514305 C1orf131Q8NDD1 294 aaKnown RBP21.13■□□□□ 0.97
USP53-208ENST00000514305 C18orf8Q96DM3 657 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 MSANTD3Q96H12 275 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 IER2Q9BTL4 223 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 SLC4A5Q9BY07 1137 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 WDR35Q9P2L0 1181 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 USP3Q9Y6I4 520 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 GVINP1Q7Z2Y8 2422 aa21.13■□□□□ 0.97
USP53-208ENST00000514305 ZNF638Q14966 1978 aaKnown RBP21.12■□□□□ 0.97
USP53-208ENST00000514305 FAM92AA1XBS5 289 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 SHISA7A6NL88 538 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 CALB1P05937 261 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 LCP1P13796 627 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 HMGA1P17096 107 aaKnown RBP21.12■□□□□ 0.97
USP53-208ENST00000514305 RPL34P49207 117 aaKnown RBP21.12■□□□□ 0.97
USP53-208ENST00000514305 RGS7P49802 495 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 NOMO3P69849 1222 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 FOXK2Q01167 660 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 FCHO2Q0JRZ9 810 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 TAF10Q12962 218 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 CLEC16AQ2KHT3 1053 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 NAA35Q5VZE5 725 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 HGSNATQ68CP4 663 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 TOGARAM2Q6ZUX3 1019 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 CCDC186Q7Z3E2 898 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 ZNF571Q7Z3V5 609 aaPredicted RBP21.12■□□□□ 0.97
USP53-208ENST00000514305 TMTC1Q8IUR5 882 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 TC2NQ8N9U0 490 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 TRIM11Q96F44 468 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 TMEM30AQ9NV96 361 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 ZSCAN32Q9NX65 697 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 F5P12259 2224 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 DENND4CQ5VZ89 1909 aa21.12■□□□□ 0.97
USP53-208ENST00000514305 AKR1B10O60218 316 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 IPO7O95373 1038 aaKnown RBP21.11■□□□□ 0.97
USP53-208ENST00000514305 RALAP11233 206 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 CHRNB2P17787 502 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 KPNA1P52294 538 aaPredicted RBP21.11■□□□□ 0.97
USP53-208ENST00000514305 MLLT6P55198 1093 aaPredicted RBP21.11■□□□□ 0.97
USP53-208ENST00000514305 CENPCQ03188 943 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 ADIGQ0VDE8 80 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 MTAPQ13126 283 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 FZD5Q13467 585 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 EFHC1Q5JVL4 640 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 PM20D1Q6GTS8 502 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 ACAD10Q6JQN1 1059 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 GPIHBP1Q8IV16 184 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 SCAMP5Q8TAC9 235 aa21.11■□□□□ 0.97
USP53-208ENST00000514305 VCPIP1Q96JH7 1222 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms