RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 XRCC4Q13426 336 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 CHI3L2Q15782 390 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 STRIP1Q5VSL9 837 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 PIK3C3Q8NEB9 887 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 OR7A2PQ8NGA2 310 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 DCAF4Q8WV16 495 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 RBAKQ9NYW8 714 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 AKAP7Q9P0M2 348 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 NRKQ7Z2Y5 1582 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 UTYO14607 1347 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 ABCB11O95342 1321 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 MOCS2O96007 188 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 VAV1P15498 845 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 NPR2P20594 1047 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 MAPKAPK2P49137 400 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 GMPSP49915 693 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 JAK3P52333 1124 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 DLG4P78352 724 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 SPP2Q13103 211 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 RABL6Q3YEC7 729 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 KCNT1Q5JUK3 1230 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 C12orf60Q5U649 245 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 DENND5AQ6IQ26 1287 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 PRR23CQ6ZRP0 262 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TMPRSS6Q8IU80 811 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 PSMA8Q8TAA3 256 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 USP13Q92995 863 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 SENP7Q9BQF6 1050 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 EIF2AK1Q9BQI3 630 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 VPS33BQ9H267 617 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TASP1Q9H6P5 420 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TUBGCP4Q9UGJ1 667 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 DDX20Q9UHI6 824 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TAGLN3Q9UI15 199 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 STAP1Q9ULZ2 295 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TMED5Q9Y3A6 229 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TPRKBQ9Y3C4 175 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 SETD1BQ9UPS6 1966 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 ARIH2O95376 493 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 SNRPAP09012 282 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 MAGEA10P43363 369 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 GSSP48637 474 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 KCNK10P57789 538 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 USP10Q14694 798 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 GRM4Q14833 912 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TAF5Q15542 800 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 RBBP7Q16576 425 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 MROH9Q5TGP6 573 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 IRAK1BP1Q5VVH5 260 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 FOXR1Q6PIV2 292 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 RBM43Q6ZSC3 357 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 USP50Q70EL3 339 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 ENOSF1Q7L5Y1 443 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TRAPPC11Q7Z392 1133 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 OR6J1Q8NGC5 347 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 SERPINB12Q96P63 405 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TRIM62Q9BVG3 475 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM217BQ9NTX9 383 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 CAPN6Q9Y6Q1 641 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 P4HBP07237 508 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 GPC3P51654 580 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 KCNMA1Q12791 1236 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 HLFQ16534 295 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 QRICH1Q2TAL8 776 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 EFHC2Q5JST6 749 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 EGFLAMQ63HQ2 1017 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 ITPRIPL1Q6GPH6 555 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 SNRNP48Q6IEG0 339 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 KLHL24Q6TFL4 600 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 RCOR2Q8IZ40 523 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 MAGEB18Q96M61 343 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM111AQ96PZ2 611 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 ECSITQ9BQ95 431 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 TTYH1Q9H313 450 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 UBE2QL1A1L167 161 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 MYMKA6NI61 221 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 MEI4A8MW99 385 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ADORA2BP29275 332 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 NAA20P61599 178 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 IL5RAQ01344 420 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 MPP3Q13368 585 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SPIDRQ14159 915 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 TMEM132BQ14DG7 1078 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 EPC2Q52LR7 807 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ANGEL2Q5VTE6 544 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SCN4BQ8IWT1 228 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 LRRN4CLQ8ND94 238 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 WNK4Q96J92 1243 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 PHACTR1Q9C0D0 580 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 WDR12Q9GZL7 423 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SYNDIG1Q9H7V2 258 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 TRPV5Q9NQA5 729 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 CRNNQ9UBG3 495 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF222Q9UK12 451 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 GRID1Q9ULK0 1009 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 CHRNA5P30532 468 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 FMO5P49326 533 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 GPSM2P81274 684 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ALX1Q15699 326 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SMU1Q2TAY7 513 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms