RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SELENOOQ9BVL4 669 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 PACSIN1Q9BY11 444 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 THAP2Q9H0W7 228 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 CNOT8Q9UFF9 292 aaKnown RBP30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 PRKAG3Q9UGI9 489 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 RASAL2Q9UJF2 1139 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 DNMT3LQ9UJW3 386 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 CCL26Q9Y258 94 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 TCRBV5S1A1TA0A578 114 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 FCARP24071 287 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 SLC7A9P82251 487 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 ZP2Q05996 745 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 DCAF6Q58WW2 860 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 SYPL2Q5VXT5 272 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 MIB1Q86YT6 1006 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 DEFB106AQ8N104 65 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 USP13Q92995 863 aaPredicted RBP30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 TMEM59LQ9UK28 342 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 CPQQ9Y646 472 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 NDUFA10O95299 355 aa30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 BMP1P13497 986 aa30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 FLT3P36888 993 aa30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 GALCP54803 685 aa30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 MSANTD2Q6P1R3 559 aa30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 PHF6Q8IWS0 365 aaKnown RBP eCLIP30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 DQX1Q8TE96 717 aaKnown RBP30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 TDP1Q9NUW8 608 aa30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 MARCH2Q9P0N8 246 aa30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 ARHGAP26Q9UNA1 814 aa30.95■■■□□ 2.54
LIMCH1-211ENST00000509638 KRT3P12035 628 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 WEE1P30291 646 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 LRRC8AQ8IWT6 810 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 EMC1Q8N766 993 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 CCDC112Q8NEF3 446 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 ZFRQ96KR1 1074 aaKnown RBP30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 MCEEQ96PE7 176 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 SMOC2Q9H3U7 446 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 TRPV4Q9HBA0 871 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 PARVAQ9NVD7 372 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 MYO1AQ9UBC5 1043 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 A0A0C4DFX4 3053 aa30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 KIF26AQ9ULI4 1882 aaPredicted RBP30.94■■■□□ 2.54
LIMCH1-211ENST00000509638 ANKRD62A6NC57 917 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 LOC730098B7Z3J9 87 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 LCA5LO95447 670 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 VIPR2P41587 438 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 PLEKHA7Q6IQ23 1121 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 TRNP1Q6NT89 227 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 PARM1Q6UWI2 310 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 MTSS1LQ765P7 747 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 ZDHHC14Q8IZN3 488 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 PLCD3Q8N3E9 789 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 TTC16Q8NEE8 873 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 JOSD2Q8TAC2 188 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 ADAM32Q8TC27 787 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 FGF14Q92915 247 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 SFMBT1Q9UHJ3 866 aa30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 EPN1Q9Y6I3 576 aaPredicted RBP30.93■■■□□ 2.54
LIMCH1-211ENST00000509638 EIF3CLB5ME19 914 aaKnown RBP30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 MSI1O43347 362 aaKnown RBP30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 PTMAP06454 111 aaKnown RBP30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 H2AFZP0C0S5 128 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 MATKP42679 507 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 MAMLD1Q13495 774 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 HTR4Q13639 388 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 PPP1R15BQ5SWA1 713 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 H2AFVQ71UI9 128 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 ARCQ7LC44 396 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 TAC4Q86UU9 113 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 RSPRY1Q96DX4 576 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 EIF3CQ99613 913 aaKnown RBP30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 KXD1Q9BQD3 176 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 KIF9Q9HAQ2 790 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 SCINQ9Y6U3 715 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 SIGLEC16A6NMB1 481 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 PITX1P78337 314 aaPredicted RBP30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 ZXDBP98169 803 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 SPA17Q15506 151 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 TANGO2Q6ICL3 276 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 CTNNBL1Q8WYA6 563 aaPredicted RBP30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 ARHGEF26Q96DR7 871 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 ZFP14Q9HCL3 533 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 NUMBLQ9Y6R0 609 aa30.92■■■□□ 2.54
LIMCH1-211ENST00000509638 IPO7O95373 1038 aaKnown RBP30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 NOS2P35228 1153 aa30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 RFC1P35251 1148 aaPredicted RBP30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 RPL7AP62424 266 aaKnown RBP30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 GPC5P78333 572 aa30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 USP4Q13107 963 aa30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 DCUN1D2Q6PH85 259 aa30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 CELF5Q8N6W0 485 aaKnown RBP30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 RIN3Q8TB24 985 aa30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 SH3RF2Q8TEC5 729 aa30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 FAM204AQ9H8W3 233 aa30.91■■■□□ 2.54
LIMCH1-211ENST00000509638 ANHXE9PGG2 379 aa30.9■■■□□ 2.54
LIMCH1-211ENST00000509638 DPYSL4O14531 572 aa30.9■■■□□ 2.54
LIMCH1-211ENST00000509638 IRF1P10914 325 aa30.9■■■□□ 2.54
LIMCH1-211ENST00000509638 C10orf76Q5T2E6 689 aa30.9■■■□□ 2.54
LIMCH1-211ENST00000509638 CFAP57Q96MR6 1250 aa30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms