RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 MGAT4AQ9UM21 535 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 GJA3Q9Y6H8 435 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 EEF2KO00418 725 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 MRASO14807 208 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 MAGEB2O15479 319 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 GYPCP04921 128 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 IFNA16P05015 189 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 GZMAP12544 262 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 GYG1P46976 350 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 FRG1Q14331 258 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 POLD3Q15054 466 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 ACAP2Q15057 778 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 SLC27A3Q5K4L6 730 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 OSBP2Q969R2 916 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 TMEM237Q96Q45 408 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 TMEM117Q9H0C3 514 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 VPS45Q9NRW7 570 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 GPC6Q9Y625 555 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 TEX14Q8IWB6 1497 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 OR14I1A6ND48 311 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 ZNF879B4DU55 563 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 DFFAO00273 331 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 KPNA3O00505 521 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 CCNE2O96020 404 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 CHI3L1P36222 383 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 BTN3A2P78410 334 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 TGM3Q08188 693 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 CDH18Q13634 790 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 INTS11Q5TA45 600 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 CDC42EP4Q9H3Q1 356 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 BARHL2Q9NY43 387 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 TMEM216Q9P0N5 145 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 MOSPD1Q9UJG1 213 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 CLCA2Q9UQC9 943 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 DENND4BO75064 1496 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 REREQ9P2R6 1566 aa11.54□□□□□ -0.56
LIMCH1-208ENST00000508501 BNIP3LO60238 219 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 TGM2P21980 687 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 SLC5A9Q2M3M2 681 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 HAUS6Q7Z4H7 955 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 EPS8L3Q8TE67 593 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 FICDQ9BVA6 458 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 EHD1Q9H4M9 534 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 AHSPQ9NZD4 102 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 ZNF222Q9UK12 451 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 TMED5Q9Y3A6 229 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 NR5A2O00482 541 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 KPNA5O15131 536 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 SMNDC1O75940 238 aaKnown RBP eCLIP11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 NPTXRO95502 500 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 CYBBP04839 570 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 GSTM1P09488 218 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 TSHRP16473 764 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 CCNCP24863 283 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 KLRC1P26715 233 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 S100GP29377 79 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 OSTNP61366 133 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 RBP5P82980 135 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 RHAGQ02094 409 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 PDCD4Q53EL6 469 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 POLNQ7Z5Q5 900 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 DPP9Q86TI2 863 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 APOPT1Q96IL0 206 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 NUDT12Q9BQG2 462 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 REEP1Q9H902 201 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 PRPF19Q9UMS4 504 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 H3BQF6 201 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 INPP4BO15327 924 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 HS6ST1O60243 411 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 PGK1P00558 417 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 GPD1P21695 349 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 GSSP48637 474 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 MGAT5Q09328 741 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 DPYSQ14117 519 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 GRM4Q14833 912 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 FUT11Q495W5 492 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 TRIM74Q86UV6 250 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 TRIM73Q86UV7 250 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 AGAP11Q8TF27 550 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 TSEN34Q9BSV6 310 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 C1QTNF1Q9BXJ1 281 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 C12orf4Q9NQ89 552 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 SLC12A4Q9UP95 1085 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 ERGIC3Q9Y282 383 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 KPNA6O60684 536 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 ZNF806P0C7X5 589 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 ETS1P14921 441 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 TNFRSF8P28908 595 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 CENPAP49450 140 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 SULT1E1P49888 294 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 MTMR1Q13613 665 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 VEPH1Q14D04 833 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 PLA2G4FQ68DD2 849 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 PSMA8Q8TAA3 256 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 TFB1MQ8WVM0 346 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 PRDM16Q9HAZ2 1276 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 RNF112Q9ULX5 631 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 TRIM17Q9Y577 477 aa11.53□□□□□ -0.56
LIMCH1-208ENST00000508501 SNAP23O00161 211 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms