RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 NUDT18Q6ZVK8 323 aa12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 SCD5Q86SK9 330 aa12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 MIB1Q86YT6 1006 aa12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 CCDC150Q8NCX0 1101 aa12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 XPO6Q96QU8 1125 aaKnown RBP12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 TMEM8AQ9HCN3 771 aa12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 TMEM9BQ9NQ34 198 aa12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 MARK1Q9P0L2 795 aa12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 NAGPAQ9UK23 515 aa12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 CACNA1BQ00975 2339 aa12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 MAP1BP46821 2468 aaKnown RBP12.16□□□□□ -0.46
HMGCS1-204ENST00000507293 NTSR1P30989 418 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 PTGER3P43115 390 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 KIF11P52732 1056 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 ST3GAL2Q16842 350 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 TRIM61Q5EBN2 209 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 C10orf120Q5SQS8 335 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 PPP1R26Q5T8A7 1209 aaPredicted RBP12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 DAB2IPQ5VWQ8 1189 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 LYSMD4Q5XG99 296 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 KRT39Q6A163 491 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 KLHDC10Q6PID8 442 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 TOGARAM2Q6ZUX3 1019 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 CCDC186Q7Z3E2 898 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 SMYD4Q8IYR2 804 aaPredicted RBP12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 SEMA4DQ92854 862 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 BHMTQ93088 406 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 ERLEC1Q96DZ1 483 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 ACOX2Q99424 681 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 DNAI2Q9GZS0 605 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 SCAND2PQ9GZW5 306 aaPredicted RBP12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 GDPD2Q9HCC8 539 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 CALCOCO1Q9P1Z2 691 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 WDR35Q9P2L0 1181 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 EVLQ9UI08 416 aaPredicted RBP12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 RASAL2Q9UJF2 1139 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 DNMT3LQ9UJW3 386 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 STARD13Q9Y3M8 1113 aa12.15□□□□□ -0.46
HMGCS1-204ENST00000507293 PCDH15Q96QU1 1955 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 A0A1W2PQF6 199 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 PRRT4C9JH25 899 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 CDX4O14627 284 aaPredicted RBP12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 GIPC1O14908 333 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 STC2O76061 302 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 ZNF202O95125 648 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 RALAP11233 206 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 GTF2H1P32780 548 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 PLA2G4AP47712 749 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 DGKGP49619 791 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 MXI1P50539 228 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 SHC2P98077 582 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 EDRF1Q3B7T1 1238 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 UAP1L1Q3KQV9 507 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 KIAA1211LQ6NV74 962 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 Q6ZNB5 142 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 TADA2BQ86TJ2 420 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 CHPFQ8IZ52 775 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 IPO4Q8TEX9 1081 aaKnown RBP12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 EEF2KMTQ96G04 330 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 HEXIM2Q96MH2 286 aaKnown RBP12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 ARID3AQ99856 593 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 DUSP16Q9BY84 665 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 CISHQ9NSE2 258 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 TMEM74BQ9NUR3 256 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 PLK2Q9NYY3 685 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 ATP6V1DQ9Y5K8 247 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 USP3Q9Y6I4 520 aa12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 KMT2BQ9UMN6 2715 aaPredicted RBP12.14□□□□□ -0.47
HMGCS1-204ENST00000507293 ASCC3Q8N3C0 2202 aaKnown RBP12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 HMBSP08397 361 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 EPB41P11171 864 aaKnown RBP12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 NDUFV2P19404 249 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 ITPKAP23677 461 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 MAPK8P45983 427 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 PSEN1P49768 467 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 RAD23BP54727 409 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 RPL6Q02878 288 aaKnown RBP12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 ZNF252P-AS1Q0IIN9 211 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 LMAN2Q12907 356 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 SH3PXD2AQ5TCZ1 1133 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 SDE2Q6IQ49 451 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 SLC36A4Q6YBV0 504 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 SYT12Q8IV01 421 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 DEFB119Q8N690 84 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 SLC4A11Q8NBS3 891 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 FBXL13Q8NEE6 735 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 P2RY11Q96G91 374 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 GABRG3Q99928 467 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 NUSAP1Q9BXS6 441 aaKnown RBP12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 RAB20Q9NX57 234 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 CLIC5Q9NZA1 410 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 RAD54BQ9Y620 910 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 CKAP5Q14008 2032 aa12.13□□□□□ -0.47
HMGCS1-204ENST00000507293 EPG5Q9HCE0 2579 aa12.12□□□□□ -0.47
HMGCS1-204ENST00000507293 IGHV1OR15-9A0A0B4J2B8 117 aa12.12□□□□□ -0.47
HMGCS1-204ENST00000507293 CETN3O15182 167 aa12.12□□□□□ -0.47
HMGCS1-204ENST00000507293 ZBTB24O43167 697 aaPredicted RBP12.12□□□□□ -0.47
HMGCS1-204ENST00000507293 AP5Z1O43299 807 aa12.12□□□□□ -0.47
HMGCS1-204ENST00000507293 STX10O60499 249 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms