RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SAR1AQ9NR31 198 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ETNK2Q9NVF9 386 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 FAM53CQ9NYF3 392 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 RPTORQ8N122 1335 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ACADSP16219 412 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ARL2P36404 184 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ADIGQ0VDE8 80 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 BMPR2Q13873 1038 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 VEPH1Q14D04 833 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ATP13A4Q4VNC1 1196 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 FAM183BPQ6ZVS7 135 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 TAS2R42Q7RTR8 314 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 STRA8Q7Z7C7 330 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 AMIGO3Q86WK7 504 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 UNC45BQ8IWX7 931 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 MYLK2Q9H1R3 596 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 NEUROG2Q9H2A3 272 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 VANGL2Q9ULK5 521 aa11.11□□□□□ -0.63
LIMCH1-205ENST00000503057 ANGPT2O15123 496 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 MED21Q13503 144 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CCDC126Q96EE4 140 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CACYBPQ9HB71 228 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 SARS2Q9NP81 518 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 DDX43Q9NXZ2 648 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 ARHGAP26Q9UNA1 814 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 DNAJC16Q9Y2G8 782 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 RIPK3Q9Y572 518 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CLGNO14967 610 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 RALBP11234 206 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CHRNB2P17787 502 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 MMP8P22894 467 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 MFSD10Q14728 455 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 RCN1Q15293 331 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CCDC153Q494R4 210 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 IQSEC1Q6DN90 963 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 FUKQ8N0W3 1084 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 NRBF2Q96F24 287 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 FAR2Q96K12 515 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 TMEM109Q9BVC6 243 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 AIM2O14862 343 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 ENO3P13929 434 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 RBL1P28749 1068 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 RPL22P35268 128 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 FAAP100Q0VG06 881 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 IMPG1Q17R60 797 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 SLC45A4Q5BKX6 768 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 HABP4Q5JVS0 413 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 SLC51AQ86UW1 340 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 SCUBE1Q8IWY4 988 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 ELMOD1Q8N336 334 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CDCA5Q96FF9 252 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CPNE1Q99829 537 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 WRAP73Q9P2S5 460 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 AJAP1Q9UKB5 411 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 MYH13Q9UKX3 1938 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 ZNF135P52742 658 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 ABCE1P61221 599 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CNGA3Q16281 694 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 USP50Q70EL3 339 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 DNAJB3Q8WWF6 145 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 INPP5DQ92835 1189 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 TMA16Q96EY4 203 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 SYT15Q9BQS2 421 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 NTPCRQ9BSD7 190 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CXorf56Q9H5V9 222 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 IARS2Q9NSE4 1012 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 TRHDEQ9UKU6 1024 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 EFR3BQ9Y2G0 817 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 CHD4Q14839 1912 aa11.1□□□□□ -0.63
LIMCH1-205ENST00000503057 WDR27A2RRH5 827 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 B4GALT4O60513 344 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 SRP72O76094 671 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 KRT16P08779 473 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 IL10P22301 178 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 AKAP5P24588 427 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ADCYAP1R1P41586 468 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 HUNKP57058 714 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 AGAP9Q5VTM2 703 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 APLFQ8IW19 511 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 FGD4Q96M96 766 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ABCF3Q9NUQ8 709 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 SAE1Q9UBE0 346 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 COQ4Q9Y3A0 265 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 B3GAT3O94766 335 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 CYP1A1P04798 512 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 CPA3P15088 417 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 KCNA3P22001 575 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 AMPD1P23109 780 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ACVR2BQ13705 512 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 INPP5AQ14642 412 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 KCNT2Q6UVM3 1135 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 SLC2A14Q8TDB8 520 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ULK4Q96C45 1275 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 OXNAD1Q96HP4 312 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 RNF157Q96PX1 679 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 BTBD10Q9BSF8 475 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 DHX33Q9H6R0 707 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 THAP1Q9NVV9 213 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ZMYM2Q9UBW7 1377 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms