RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 MFSD1Q9H3U5 465 aa7□□□□□ -1.29
PRPF40A-210ENST00000489741 PDZD7Q9H5P4 517 aa7□□□□□ -1.29
PRPF40A-210ENST00000489741 SLC2A4RGQ9NR83 387 aa7□□□□□ -1.29
PRPF40A-210ENST00000489741 PRMT7Q9NVM4 692 aaPredicted RBP7□□□□□ -1.29
PRPF40A-210ENST00000489741 CACNG4Q9UBN1 327 aa7□□□□□ -1.29
PRPF40A-210ENST00000489741 FBXW11Q9UKB1 542 aa7□□□□□ -1.29
PRPF40A-210ENST00000489741 PCDHA5Q9Y5H7 936 aa7□□□□□ -1.29
PRPF40A-210ENST00000489741 ZFP37Q9Y6Q3 630 aaPredicted RBP7□□□□□ -1.29
PRPF40A-210ENST00000489741 C7orf72A4D263 438 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 ADAM12O43184 909 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 USO1O60763 962 aaKnown RBP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 GJB6O95452 261 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 THP07101 528 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 THBDP07204 575 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 SNRPB2P08579 225 aaKnown RBP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 HNRNPA1P09651 372 aaKnown RBP eCLIP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 GLI4P10075 376 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 MYBP10242 640 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 PFKLP17858 780 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 ATP2B1P20020 1258 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 STARD6P59095 220 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 PRR5P85299 388 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 CREMQ03060 361 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 ORC2Q13416 577 aaPredicted RBP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 HTR4Q13639 388 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 RAB33AQ14088 237 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 ANGPT1Q15389 498 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 XKR4Q5GH76 650 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 NT5DC1Q5TFE4 455 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 MRM1Q6IN84 353 aaKnown RBP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 PRSS55Q6UWB4 352 aaPredicted RBP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 ALKAL1Q6UXT8 129 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 RTL10Q7L3V2 364 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 HNRNPLLQ8WVV9 542 aaKnown RBP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 NKD2Q969F2 451 aaPredicted RBP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 TTPALQ9BTX7 342 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 RPP25Q9BUL9 199 aaKnown RBP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 C2orf40Q9H1Z8 148 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 SNTG2Q9NY99 539 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 NUDT5Q9UKK9 219 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 OTOGLQ3ZCN5 2332 aa6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 SF3B1O75533 1304 aaKnown RBP eCLIP6.99□□□□□ -1.29
PRPF40A-210ENST00000489741 PLXNA3P51805 1871 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 CASTOR2A6NHX0 329 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 LRRIQ4A6NIV6 560 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 TMEM189-UBE2V1I3L0A0 370 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 TBX1O43435 398 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 TBC1D4O60343 1298 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 BUB1BO60566 1050 aaPredicted RBP6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 RECQL4O94761 1208 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 PRKCBP05771 671 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 MCM7P33993 719 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 NAMPTP43490 491 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 AFF3P51826 1226 aaKnown RBP6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 NEK4P51957 841 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 EFNA5P52803 228 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 GPC5P78333 572 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 ELAVL2Q12926 359 aaKnown RBP6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 PRPF4BQ13523 1007 aaKnown RBP6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 ZNF174Q15697 407 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 MAPK6Q16659 721 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 FAM171A1Q5VUB5 890 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 PARM1Q6UWI2 310 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 RSPO2Q6UXX9 243 aaPredicted RBP6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 ANKS3Q6ZW76 656 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 MAEAQ7L5Y9 396 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 NOSTRINQ8IVI9 506 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 MAML2Q8IZL2 1156 aaPredicted RBP6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 FGF14Q92915 247 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 PPP1R10Q96QC0 940 aaKnown RBP6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 DDX23Q9BUQ8 820 aaKnown RBP6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 FOXP1Q9H334 677 aaPredicted RBP6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 SEMA4AQ9H3S1 761 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 TBC1D17Q9HA65 648 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 PTPRHQ9HD43 1115 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 FBLN5Q9UBX5 448 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 CDH7Q9ULB5 785 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 NUMBLQ9Y6R0 609 aa6.98□□□□□ -1.29
PRPF40A-210ENST00000489741 AGRPO00253 132 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 FUCA1P04066 466 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 OR52Z1P0C646 297 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 GLULP15104 373 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 ECI1P42126 302 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 TRAPPC10P48553 1259 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 NTHL1P78549 312 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 TRIM29Q14134 588 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 PDIA5Q14554 519 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 PSMD5Q16401 504 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 UPP1Q16831 310 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 MBLAC2Q68D91 279 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 PDXDC1Q6P996 788 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 DCLRE1AQ6PJP8 1040 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 DENND4AQ7Z401 1863 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 GRASPQ7Z6J2 395 aaPredicted RBP6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 ZBTB8OSQ8IWT0 167 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 DAW1Q8N136 415 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 ADSSL1Q8N142 457 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 IGSF22Q8N9C0 903 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 NETO2Q8NC67 525 aa6.97□□□□□ -1.29
PRPF40A-210ENST00000489741 FBXO18Q8NFZ0 1043 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms