RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 YPEL5P62699 121 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 MTAPQ13126 283 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 ARHGAP29Q52LW3 1261 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 RUSC1-AS1Q66K80 236 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 UNC13DQ70J99 1090 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 ARFGAP1Q8N6T3 406 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 NGDNQ8NEJ9 315 aaKnown RBP3.71□□□□□ -1.82
CPSF3-205ENST00000489629 TRMOQ9BU70 441 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 VPS45Q9NRW7 570 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 DNAJB11Q9UBS4 358 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 OGDHLQ9ULD0 1010 aa3.71□□□□□ -1.82
CPSF3-205ENST00000489629 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.71□□□□□ -1.82
CPSF3-205ENST00000489629 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 C16orf96A6NNT2 1141 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 RRHO14718 337 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 TPP1O14773 563 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 CA12O43570 354 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 INMTO95050 263 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 MAP4K4O95819 1239 aaPredicted RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 MT-ND5P03915 603 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 TACR3P29371 465 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 ME1P48163 572 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 EIF4A1P60842 406 aaKnown RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 TXNL4AP83876 142 aaKnown RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 MTX1Q13505 466 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 DNASE1L3Q13609 305 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 PPP2R5AQ15172 486 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 SLC9C1Q4G0N8 1177 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 EARS2Q5JPH6 523 aaKnown RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 CC2D1BQ5T0F9 858 aaKnown RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 CYB5RLQ6IPT4 315 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 MZT2AQ6P582 158 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 CLEC9AQ6UXN8 241 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 C9orf47Q6ZRZ4 202 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 SRGAP1Q7Z6B7 1085 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 ANKRD13BQ86YJ7 626 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 SMCR8Q8TEV9 937 aaPredicted RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 P2RY11Q96G91 374 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 PRR11Q96HE9 360 aaPredicted RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 VPS50Q96JG6 964 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 MARK4Q96L34 752 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 FAM227BQ96M60 508 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 CAMK1GQ96NX5 476 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 TM2D2Q9BX73 214 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 ADGRE3Q9BY15 652 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 USP29Q9HBJ7 922 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 AS3MTQ9HBK9 375 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 ZNF287Q9HBT7 754 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 AGO4Q9HCK5 861 aaKnown RBP3.7□□□□□ -1.82
CPSF3-205ENST00000489629 POT1Q9NUX5 634 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 ITGB1BP2Q9UKP3 347 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 LRP12Q9Y561 859 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 HS3ST3B1Q9Y662 390 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 EID1Q9Y6B2 187 aa3.7□□□□□ -1.82
CPSF3-205ENST00000489629 GOLIM4O00461 696 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 SNX2O60749 519 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 ALPLP05186 524 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 PSG1P11464 419 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 TNFRSF1BP20333 461 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 RBL1P28749 1068 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 THBS3P49746 956 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 NANOS2P60321 138 aaKnown RBP3.69□□□□□ -1.82
CPSF3-205ENST00000489629 FAM193AP78312 1265 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 STIM1Q13586 685 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 GALEQ14376 348 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 GRM3Q14832 879 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 KPNB1Q14974 876 aaKnown RBP3.69□□□□□ -1.82
CPSF3-205ENST00000489629 PFKFB3Q16875 520 aaPredicted RBP3.69□□□□□ -1.82
CPSF3-205ENST00000489629 DARS2Q6PI48 645 aaKnown RBP3.69□□□□□ -1.82
CPSF3-205ENST00000489629 CCDC149Q6ZUS6 474 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 MEPCEQ7L2J0 689 aaKnown RBP3.69□□□□□ -1.82
CPSF3-205ENST00000489629 TFAP2DQ7Z6R9 452 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 C16orf71Q8IYS4 520 aaPredicted RBP3.69□□□□□ -1.82
CPSF3-205ENST00000489629 SNX22Q96L94 193 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 GATA5Q9BWX5 397 aaPredicted RBP3.69□□□□□ -1.82
CPSF3-205ENST00000489629 NUAK2Q9H093 628 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 SAP30LQ9HAJ7 183 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 ZBTB40Q9NUA8 1239 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 HPSEQ9Y251 543 aa3.69□□□□□ -1.82
CPSF3-205ENST00000489629 TTBK1Q5TCY1 1321 aaPredicted RBP3.69□□□□□ -1.82
CPSF3-205ENST00000489629 IGKV2D-30A0A075B6S6 120 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 C2CD4BA6NLJ0 364 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 F8W8V4 182 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 PLAUP00749 431 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 TMIGD3P0DMS9 266 aaPredicted RBP3.68□□□□□ -1.82
CPSF3-205ENST00000489629 TMEM225BP0DP42 221 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 SCP2P22307 547 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 PEX2P28328 305 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 GALNSP34059 522 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 CCDC15Q0P6D6 951 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 SEMA5AQ13591 1074 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 GBX1Q14549 363 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 ACOX1Q15067 660 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 FAM110CQ1W6H9 321 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 KIAA0753Q2KHM9 967 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 MIDNQ504T8 468 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 PIM3Q86V86 326 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 FAM71DQ8N9W8 422 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms