RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 GDE1Q9NZC3 331 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 LIMD1Q9UGP4 676 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 CDH22Q9UJ99 828 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 CDH7Q9ULB5 785 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 NR2E1Q9Y466 385 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 ANKRD62A6NC57 917 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 YJEFN3A6XGL0 299 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 E7ENQ6 273 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 GOLGA8SH3BPF8 625 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 PAPSS1O43252 624 aaPredicted RBP10.78□□□□□ -0.68
SKA1-204ENST00000488454 LTFP02788 710 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 GLI1P08151 1106 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 ZDHHC11BP0C7U3 371 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 MYBL1P10243 752 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 RARGP13631 454 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 PFKLP17858 780 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 HDCP19113 662 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 ATP5C1P36542 298 aaKnown RBP10.78□□□□□ -0.68
SKA1-204ENST00000488454 AVPR1AP37288 418 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 TUBP50607 506 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 RNASE9P60153 205 aaKnown RBP10.78□□□□□ -0.68
SKA1-204ENST00000488454 YWHAZP63104 245 aaKnown RBP10.78□□□□□ -0.68
SKA1-204ENST00000488454 CYP4F8P98187 520 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 SMAD2Q15796 467 aaKnown RBP10.78□□□□□ -0.68
SKA1-204ENST00000488454 SLC5A9Q2M3M2 681 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 C10orf76Q5T2E6 689 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 FAM102AQ5T9C2 384 aaPredicted RBP10.78□□□□□ -0.68
SKA1-204ENST00000488454 SNX30Q5VWJ9 437 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 TXNDC8Q6A555 127 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 FAM183BPQ6ZVS7 135 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 SCD5Q86SK9 330 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 TMEM150AQ86TG1 271 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 MCOLN2Q8IZK6 566 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 CCDC112Q8NEF3 446 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 FEZF2Q8TBJ5 459 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 CLEC4CQ8WTT0 213 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 FGF13Q92913 245 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 SELENOOQ9BVL4 669 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 ISCUQ9H1K1 167 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 POPDC2Q9HBU9 364 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 OLA1Q9NTK5 396 aaKnown RBP10.78□□□□□ -0.68
SKA1-204ENST00000488454 ASNSD1Q9NWL6 643 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 TAS2R14Q9NYV8 317 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 TJP2Q9UDY2 1190 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 USTQ9Y2C2 406 aa10.78□□□□□ -0.68
SKA1-204ENST00000488454 MTCL1Q9Y4B5 1905 aaKnown RBP10.78□□□□□ -0.68
SKA1-204ENST00000488454 TLR5O60602 858 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 HSF2BPO75031 334 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 MOSPD3O75425 235 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 CKMP06732 381 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 H2AFZP0C0S5 128 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 KRT3P12035 628 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 NCAM1P13591 858 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 DESP17661 470 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 CEBPBP17676 345 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 SCNN1AP37088 669 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 GPC5P78333 572 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 ASTE1Q2TB18 679 aaPredicted RBP10.77□□□□□ -0.69
SKA1-204ENST00000488454 C2CD6Q53TS8 623 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 C10orf120Q5SQS8 335 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 DNAJC24Q6P3W2 148 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 DCUN1D2Q6PH85 259 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 OLFML1Q6UWY5 402 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 H2AFVQ71UI9 128 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 MON1BQ7L1V2 547 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 BEND5Q7L4P6 421 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 PHLDB2Q86SQ0 1253 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 XYLT1Q86Y38 959 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 NPAS3Q8IXF0 933 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 CMTM8Q8IZV2 173 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 TDRD5Q8NAT2 981 aaKnown RBP10.77□□□□□ -0.69
SKA1-204ENST00000488454 ZSCAN18Q8TBC5 510 aaPredicted RBP10.77□□□□□ -0.69
SKA1-204ENST00000488454 ZNF653Q96CK0 615 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 RPGRIP1Q96KN7 1286 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 SLC46A2Q9BY10 475 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 NMUR1Q9HB89 426 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 MRPL47Q9HD33 250 aaKnown RBP10.77□□□□□ -0.69
SKA1-204ENST00000488454 SPTLC3Q9NUV7 552 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 PARVAQ9NVD7 372 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.77□□□□□ -0.69
SKA1-204ENST00000488454 MYO1AQ9UBC5 1043 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 CNOT8Q9UFF9 292 aaKnown RBP10.77□□□□□ -0.69
SKA1-204ENST00000488454 DNMT3LQ9UJW3 386 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 EPN1Q9Y6I3 576 aaPredicted RBP10.77□□□□□ -0.69
SKA1-204ENST00000488454 ATG2AQ2TAZ0 1938 aa10.77□□□□□ -0.69
SKA1-204ENST00000488454 C2orf78A6NCI8 922 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 SOWAHDA6NJG2 315 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 SIGLEC16A6NMB1 481 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 EIF3CLB5ME19 914 aaKnown RBP10.76□□□□□ -0.69
SKA1-204ENST00000488454 COCHO43405 550 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 TADA3O75528 432 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 GRAP2O75791 330 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 MBL2P11226 248 aaPredicted RBP10.76□□□□□ -0.69
SKA1-204ENST00000488454 LAMP2P13473 410 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 ABCB4P21439 1286 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 SP100P23497 879 aaPredicted RBP10.76□□□□□ -0.69
SKA1-204ENST00000488454 RRM1P23921 792 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 MAGEA1P43355 309 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 PGFP49763 221 aa10.76□□□□□ -0.69
SKA1-204ENST00000488454 KRT83P78385 493 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms