RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 SKA1Q96BD8 255 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 PPWD1Q96BP3 646 aaKnown RBP13.16□□□□□ -0.3
VPS52-218ENST00000482399 MARK4Q96L34 752 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 TSNARE1Q96NA8 513 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 PHF12Q96QT6 1004 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 ST6GALNAC4Q9H4F1 302 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 KCNK13Q9HB14 408 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 ZNF358Q9NW07 568 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 KCNK4Q9NYG8 393 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 ARHGAP28Q9P2N2 729 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 HMGXB4Q9UGU5 601 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 PLLPQ9Y342 182 aa13.16□□□□□ -0.3
VPS52-218ENST00000482399 A8MXQ7 604 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 B4GALT5O43286 388 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 ITM2AO43736 263 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 MLH1P40692 756 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 GLRBP48167 497 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 SLC1A6P48664 564 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 TAP1Q03518 808 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 TBL3Q12788 808 aaKnown RBP13.15□□□□□ -0.3
VPS52-218ENST00000482399 VSIG10LQ86VR7 867 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 CCNYL1Q8N7R7 359 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 MIPOL1Q8TD10 442 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 GRIP2Q9C0E4 1043 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 RNASEH1O60930 286 aaKnown RBP13.15□□□□□ -0.3
VPS52-218ENST00000482399 TM7SF2O76062 418 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 ASS1P00966 412 aaKnown RBP13.15□□□□□ -0.3
VPS52-218ENST00000482399 MRPS22P82650 360 aaKnown RBP13.15□□□□□ -0.3
VPS52-218ENST00000482399 DYNC1I2Q13409 638 aaKnown RBP13.15□□□□□ -0.3
VPS52-218ENST00000482399 CNPY1Q3B7I2 92 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 CMC1Q7Z7K0 106 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 FAM172AQ8WUF8 416 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 PPP2R3CQ969Q6 453 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 WRNIP1Q96S55 665 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 EPAS1Q99814 870 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 SLC38A10Q9HBR0 1119 aa13.15□□□□□ -0.3
VPS52-218ENST00000482399 XPO1O14980 1071 aaKnown RBP13.15□□□□□ -0.31
VPS52-218ENST00000482399 LCP1P13796 627 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 GPD1P21695 349 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 CLCN3P51790 818 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 YWHAZP63104 245 aaKnown RBP13.15□□□□□ -0.31
VPS52-218ENST00000482399 DLG1Q12959 904 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 ACAP1Q15027 740 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 OR52E8Q6IFG1 317 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 DPY19L2Q6NUT2 758 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 WDR83Q9BRX9 315 aaKnown RBP13.15□□□□□ -0.31
VPS52-218ENST00000482399 KLHL4Q9C0H6 718 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 QTRT2Q9H974 415 aaKnown RBP13.15□□□□□ -0.31
VPS52-218ENST00000482399 ADA2Q9NZK5 511 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 HBS1LQ9Y450 684 aaKnown RBP13.15□□□□□ -0.31
VPS52-218ENST00000482399 DTNAQ9Y4J8 743 aa13.15□□□□□ -0.31
VPS52-218ENST00000482399 APOEP02649 317 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 SUPT20HL2P0C7V6 817 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 PTGER2P43116 358 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 CCNG1P51959 295 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 ART3Q13508 389 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 STXBP2Q15833 593 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 SUPT20HL1Q3ZLR7 823 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 LIN52Q52LA3 116 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 PDPK2PQ6A1A2 396 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 PPP1R2P3Q6NXS1 205 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 EZH1Q92800 747 aaPredicted RBP13.14□□□□□ -0.31
VPS52-218ENST00000482399 SGF29Q96ES7 293 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 HESX1Q9UBX0 185 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 CNTNAP2Q9UHC6 1331 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 RTN3O95197 1032 aaPredicted RBP13.14□□□□□ -0.31
VPS52-218ENST00000482399 LYPLA2O95372 231 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 PDGFRBP09619 1106 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 ERVK-10P10266 1014 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 ADORA2BP29275 332 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 TGFB2P61812 414 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 CAPSQ13938 189 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 SPDYAQ5MJ70 313 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 LRRC38Q5VT99 294 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 UNC5AQ6ZN44 842 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 SAMD7Q7Z3H4 446 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 KDELC2Q7Z4H8 507 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 DHDDSQ86SQ9 333 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 WDTC1Q8N5D0 677 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 ZSCAN18Q8TBC5 510 aaPredicted RBP13.14□□□□□ -0.31
VPS52-218ENST00000482399 PIWIL2Q8TC59 973 aaKnown RBP13.14□□□□□ -0.31
VPS52-218ENST00000482399 SREK1Q8WXA9 508 aaKnown RBP13.14□□□□□ -0.31
VPS52-218ENST00000482399 CDHR1Q96JP9 859 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 PRPF18Q99633 342 aaKnown RBP13.14□□□□□ -0.31
VPS52-218ENST00000482399 MAGEB5Q9BZ81 275 aa13.14□□□□□ -0.31
VPS52-218ENST00000482399 FARP1Q9Y4F1 1045 aaPredicted RBP13.14□□□□□ -0.31
VPS52-218ENST00000482399 RREB1Q92766 1687 aa13.13□□□□□ -0.31
VPS52-218ENST00000482399 SIGLEC16A6NMB1 481 aa13.13□□□□□ -0.31
VPS52-218ENST00000482399 TPP1O14773 563 aa13.13□□□□□ -0.31
VPS52-218ENST00000482399 MICAL2O94851 1124 aa13.13□□□□□ -0.31
VPS52-218ENST00000482399 MT-CO1P00395 513 aa13.13□□□□□ -0.31
VPS52-218ENST00000482399 NAMPTP43490 491 aa13.13□□□□□ -0.31
VPS52-218ENST00000482399 ATXN1P54253 815 aaKnown RBP13.13□□□□□ -0.31
VPS52-218ENST00000482399 PTPN11Q06124 597 aaPredicted RBP13.13□□□□□ -0.31
VPS52-218ENST00000482399 LAYNQ6UX15 382 aa13.13□□□□□ -0.31
VPS52-218ENST00000482399 MARK2Q7KZI7 788 aaKnown RBP13.13□□□□□ -0.31
VPS52-218ENST00000482399 RELL1Q8IUW5 271 aa13.13□□□□□ -0.31
VPS52-218ENST00000482399 OR6B3Q8NGW1 331 aa13.13□□□□□ -0.31
VPS52-218ENST00000482399 PIWIL1Q96J94 861 aaKnown RBP13.13□□□□□ -0.31
VPS52-218ENST00000482399 C20orf27Q9GZN8 174 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms