RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 DNMT3LQ9UJW3 386 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 NAGPAQ9UK23 515 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 COQ4Q9Y3A0 265 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 TBC1D3BA6NDS4 549 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 NEDD8-MDP1E9PL57 170 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 TYRP14679 529 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 PSEN1P49768 467 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 FKBP3Q00688 224 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 CREB5Q02930 508 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 GOLGA8FQ08AF8 430 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 GOLGA8DPQ0D2H9 430 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 RAB41Q5JT25 222 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 EOGTQ5NDL2 527 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 C10orf76Q5T2E6 689 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 TCERG1LQ5VWI1 586 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 ARHGAP17Q68EM7 881 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 C11orf74Q86VG3 221 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 TTC30AQ86WT1 665 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 MIB1Q86YT6 1006 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 ZNF513Q8N8E2 541 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 KCNV2Q8TDN2 545 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 SLC35C1Q96A29 364 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 TSG101Q99816 390 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 DNAI2Q9GZS0 605 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 DNAJC17Q9NVM6 304 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 CLIC5Q9NZA1 410 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 LSM7Q9UK45 103 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 AKAP13Q12802 2813 aa19.77■□□□□ 0.76
CCDC88B-206ENST00000473405 GOLGA6L4A6NEF3 574 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 TM4SF5O14894 197 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 STC2O76061 302 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 ALDH1A2O94788 518 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 SMC2O95347 1197 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 P2RY2P41231 377 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 NUCB2P80303 420 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 LRRC63Q05C16 580 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 BECN1Q14457 450 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 PREPLQ4J6C6 727 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 STPG1Q5TH74 334 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 TPGS1Q6ZTW0 290 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 HMGB4Q8WW32 186 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 RLN3Q8WXF3 142 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 SMARCE1Q969G3 411 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 TIGD1Q96MW7 591 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 BBS2Q9BXC9 721 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 POLMQ9NP87 494 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 ZZEF1O43149 2961 aa19.76■□□□□ 0.75
CCDC88B-206ENST00000473405 TCRBV21S2A2A0A5A6 115 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 CAVIN2O95810 425 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 KLKB1P03952 638 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 ADRB1P08588 477 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 PLA2G4AP47712 749 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 CUL2Q13617 745 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 EGFLAMQ63HQ2 1017 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 GRAMD4Q6IC98 578 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 TOGARAM2Q6ZUX3 1019 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 BHLHA9Q7RTU4 235 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 TADA2BQ86TJ2 420 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 PIGZQ86VD9 579 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 FRMD1Q8N878 549 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 UBXN6Q9BZV1 441 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 CD248Q9HCU0 757 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 STARD13Q9Y3M8 1113 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 GON4LQ3T8J9 2241 aa19.75■□□□□ 0.75
CCDC88B-206ENST00000473405 LNP1A1A4G5 178 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 PRRT4C9JH25 899 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 TULP2O00295 520 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 CD44P16070 742 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 PI4KAP42356 2102 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 MAP7D1Q3KQU3 841 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 IL31Q6EBC2 164 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 TRMT11Q7Z4G4 463 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 UBR7Q8N806 425 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 ANKRD52Q8NB46 1076 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 CDK5RAP1Q96SZ6 601 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 BCCIPQ9P287 314 aaKnown RBP eCLIP19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 WDR35Q9P2L0 1181 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 ARMCX3Q9UH62 379 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 MBD1Q9UIS9 605 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 CACNA1BQ00975 2339 aa19.74■□□□□ 0.75
CCDC88B-206ENST00000473405 ZFHX4Q86UP3 3567 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 A0A1W2PQF6 199 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 CISD3P0C7P0 127 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 RALAP11233 206 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 HOXB2P14652 356 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 GABRG2P18507 467 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 EFEMP1Q12805 493 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 GOLGA7BQ2TAP0 167 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 CYP2U1Q7Z449 544 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 DDX1Q92499 740 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 BHMTQ93088 406 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 XPO6Q96QU8 1125 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 ACOX2Q99424 681 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 GTPBP4Q9BZE4 634 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 RASAL2Q9UJF2 1139 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 TSPAN16Q9UKR8 245 aa19.73■□□□□ 0.75
CCDC88B-206ENST00000473405 PATE3B3GLJ2 98 aa19.72■□□□□ 0.75
CCDC88B-206ENST00000473405 PSMA7O14818 248 aa19.72■□□□□ 0.75
CCDC88B-206ENST00000473405 BMP6P22004 513 aa19.72■□□□□ 0.75
CCDC88B-206ENST00000473405 NTSR1P30989 418 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms