RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 PDE4CQ08493 712 aa17.53■□□□□ 0.4
USP40-212ENST00000473191 TERB1Q8NA31 727 aa17.53■□□□□ 0.4
USP40-212ENST00000473191 ANKRD52Q8NB46 1076 aa17.53■□□□□ 0.4
USP40-212ENST00000473191 UBA3Q8TBC4 463 aa17.53■□□□□ 0.4
USP40-212ENST00000473191 FAXDC2Q96IV6 333 aa17.53■□□□□ 0.4
USP40-212ENST00000473191 CNOT6LQ96LI5 555 aaKnown RBP17.53■□□□□ 0.4
USP40-212ENST00000473191 ZSWIM1Q9BR11 485 aa17.53■□□□□ 0.4
USP40-212ENST00000473191 BBS2Q9BXC9 721 aa17.53■□□□□ 0.4
USP40-212ENST00000473191 DEC1Q9P2X7 70 aa17.53■□□□□ 0.4
USP40-212ENST00000473191 CTNND2Q9UQB3 1225 aa17.53■□□□□ 0.4
USP40-212ENST00000473191 SPAG17Q6Q759 2223 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 ZNF806P0C7X5 589 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 TRIM21P19474 475 aaKnown RBP17.52■□□□□ 0.4
USP40-212ENST00000473191 GBP1P32455 592 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 TNFRSF4P43489 277 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 PLA2G4AP47712 749 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 TKTL1P51854 596 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 EFEMP1Q12805 493 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 C10orf76Q5T2E6 689 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 BTBD8Q5XKL5 378 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 EGFLAMQ63HQ2 1017 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 KLHDC10Q6PID8 442 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 ABCA7Q8IZY2 2146 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 LMO3Q8TAP4 145 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 NETO1Q8TDF5 533 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 NELFBQ8WX92 580 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 TFAP2BQ92481 460 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 LOXL4Q96JB6 756 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 RTKNQ9BST9 563 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 ULBP1Q9BZM6 244 aa17.52■□□□□ 0.4
USP40-212ENST00000473191 DNAJC17Q9NVM6 304 aaKnown RBP17.52■□□□□ 0.4
USP40-212ENST00000473191 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.51■□□□□ 0.39
USP40-212ENST00000473191 PIK3R2O00459 728 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 SLC30A4O14863 429 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 CACNG3O60359 315 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 CISD3P0C7P0 127 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 YWHAGP61981 247 aaKnown RBP eCLIP17.51■□□□□ 0.39
USP40-212ENST00000473191 CREB5Q02930 508 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 MORC3Q14149 939 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 AASDHQ4L235 1098 aaPredicted RBP17.51■□□□□ 0.39
USP40-212ENST00000473191 ZNF513Q8N8E2 541 aaPredicted RBP17.51■□□□□ 0.39
USP40-212ENST00000473191 OLIG1Q8TAK6 271 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 HMGB4Q8WW32 186 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 DHTKD1Q96HY7 919 aaPredicted RBP17.51■□□□□ 0.39
USP40-212ENST00000473191 CLIC5Q9NZA1 410 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 MBD1Q9UIS9 605 aaPredicted RBP17.51■□□□□ 0.39
USP40-212ENST00000473191 CLEC4EQ9ULY5 219 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 LAMA1P25391 3075 aa17.51■□□□□ 0.39
USP40-212ENST00000473191 TCRBV21S2A2A0A5A6 115 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 PATE3B3GLJ2 98 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 PSMA7O14818 248 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 CD19P15391 556 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 CCDC40Q4G0X9 1142 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 USP39Q53GS9 565 aaKnown RBP17.5■□□□□ 0.39
USP40-212ENST00000473191 PMS2CLQ68D20 193 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 GRAMD4Q6IC98 578 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 KIAA1211LQ6NV74 962 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 ARHGEF19Q8IW93 802 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 ELOA2Q8IYF1 753 aaPredicted RBP17.5■□□□□ 0.39
USP40-212ENST00000473191 CD248Q9HCU0 757 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 CD93Q9NPY3 652 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 MARK1Q9P0L2 795 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 LSM7Q9UK45 103 aaKnown RBP17.5■□□□□ 0.39
USP40-212ENST00000473191 AGO1Q9UL18 857 aaKnown RBP17.5■□□□□ 0.39
USP40-212ENST00000473191 CIZ1Q9ULV3 898 aaPredicted RBP17.5■□□□□ 0.39
USP40-212ENST00000473191 RAD54BQ9Y620 910 aa17.5■□□□□ 0.39
USP40-212ENST00000473191 THADAQ6YHU6 1953 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 MYO18AQ92614 2054 aaKnown RBP17.49■□□□□ 0.39
USP40-212ENST00000473191 CACNA1AO00555 2505 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 A0A1W2PQF6 199 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 WASH3PC4AMC7 463 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 O00370 1275 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 XPO1O14980 1071 aaKnown RBP17.49■□□□□ 0.39
USP40-212ENST00000473191 RALAP11233 206 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 CORO1AP31146 461 aaKnown RBP17.49■□□□□ 0.39
USP40-212ENST00000473191 PSEN1P49768 467 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 ADIGQ0VDE8 80 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 PKDCCQ504Y2 493 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 SGO2Q562F6 1265 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 EOGTQ5NDL2 527 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 FYB2Q5VWT5 728 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 PM20D1Q6GTS8 502 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 TMEM270Q6UE05 265 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 RRAGAQ7L523 313 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 DENND1CQ8IV53 801 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 ZNF276Q8N554 614 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 C12orf50Q8NA57 414 aaPredicted RBP17.49■□□□□ 0.39
USP40-212ENST00000473191 CCDC26Q8TAB7 109 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 EDEM1Q92611 657 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 CEP63Q96MT8 703 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 UBXN6Q9BZV1 441 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 SLC6A17Q9H1V8 727 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 SFMBT1Q9UHJ3 866 aa17.49■□□□□ 0.39
USP40-212ENST00000473191 HOOK1Q9UJC3 728 aaKnown RBP17.49■□□□□ 0.39
USP40-212ENST00000473191 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 SLC12A8A0AV02 714 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 BCLAF3A2AJT9 711 aaKnown RBP17.48■□□□□ 0.39
USP40-212ENST00000473191 YJEFN3A6XGL0 299 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 E7ENQ6 273 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 ZBED1O96006 694 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms