RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SFMBT1Q9UHJ3 866 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 CFAP69A5D8W1 941 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 FAM47DPA6NHR8 397 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 EEF2KO00418 725 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 MTA2O94776 668 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 MAGEA9P43362 315 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 TPI1P60174 286 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 PCGF5Q86SE9 256 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 ERP27Q96DN0 273 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 PCDH18Q9HCL0 1135 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 PAEPP09466 180 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 GNAT1P11488 350 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 PTPN1P18031 435 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 GRM5P41594 1212 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 TMPRSS15P98073 1019 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 TAP1Q03518 808 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 STAT4Q14765 748 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 TAF12Q16514 161 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 DCAF4L1Q3SXM0 396 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 TCP10LQ8TDR4 215 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 RNF157Q96PX1 679 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 AGO3Q9H9G7 860 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 MIOSQ9NXC5 875 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 GJD2Q9UKL4 321 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 WDR27A2RRH5 827 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 C9IYK1 514 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 COPEO14579 308 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 PMPCBO75439 489 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 ENDOD1O94919 500 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 ASGR1P07306 291 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 PRKAR2AP13861 404 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 TARSP26639 723 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 ARL1P40616 181 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 GJA9P57773 515 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 ANKRD20A8PQ5CZ79 823 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 EFHC2Q5JST6 749 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 RAPH1Q70E73 1250 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 MPP5Q8N3R9 675 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 FERMT1Q9BQL6 677 aa14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 ZNF395Q9H8N7 513 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-211ENST00000471947 FOCADQ5VW36 1801 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 BUD23O43709 281 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 JCHAINP01591 159 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 IVDP26440 423 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 BCAT1P54687 386 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 HADHBP55084 474 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 BST2Q10589 180 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 SLC1A5Q15758 541 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 GDF6Q6KF10 455 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 TRMT10BQ6PF06 316 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 PRPF39Q86UA1 669 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 LRRC6Q86X45 466 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 SLC25A41Q8N5S1 370 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 PLD5Q8N7P1 536 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 HIPK4Q8NE63 616 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 RAET1EQ8TD07 263 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 SGF29Q96ES7 293 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 TMEM209Q96SK2 561 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 CYP3A43Q9HB55 503 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 YJEFN3A6XGL0 299 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 E7ENQ6 273 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 YWHAZP63104 245 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 SPATA21Q7Z572 469 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 DEFB128Q7Z7B8 93 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 EXT2Q93063 718 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 WNT8BQ93098 351 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 SEPT5Q99719 369 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 PCDH9Q9HC56 1237 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 CPSF2Q9P2I0 782 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 SLC27A5Q9Y2P5 690 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 C2CD4BA6NLJ0 364 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 STK10O94804 968 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 CD4P01730 458 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 ZNF132P52740 706 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 SLC25A11Q02978 314 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 KLF1Q13351 362 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 DDR2Q16832 855 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 SV2CQ496J9 727 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 BOLA3Q53S33 107 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 RGMBQ6NW40 437 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 FAM228AQ86W67 206 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 CD302Q8IX05 232 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 KIRREL3Q8IZU9 778 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 PABPC5Q96DU9 382 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 PPP1R12CQ9BZL4 782 aa14.24□□□□□ -0.13
CCDC88A-211ENST00000471947 PHIPQ8WWQ0 1821 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 GREB1LQ9C091 1923 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 APOC4-APOC2K7ER74 178 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 NRP1O14786 923 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 APOC2P02655 101 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 BGNP21810 368 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 AVPR1AP37288 418 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 CXCR3P49682 368 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 HDAC4P56524 1084 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 SNX16P57768 344 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 BBS12Q6ZW61 710 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 METTL23Q86XA0 190 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 NDUFAF2Q8N183 169 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 ZCCHC9Q8N567 271 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms