RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 XYLT1Q86Y38 959 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 PHF13Q86YI8 300 aaPredicted RBP12.5□□□□□ -0.41
VPS13D-204ENST00000469054 MIB1Q86YT6 1006 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 SLC30A5Q8TAD4 765 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 OLIG1Q8TAK6 271 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 OSCP1Q8WVF1 389 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 EDAQ92838 391 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 IRF7Q92985 503 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 PIWIL1Q96J94 861 aaKnown RBP12.5□□□□□ -0.41
VPS13D-204ENST00000469054 FAM83CQ9BQN1 747 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 TRIM62Q9BVG3 475 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 POPDC2Q9HBU9 364 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 TRPV5Q9NQA5 729 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 MARCH2Q9P0N8 246 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 CFAP97Q9P2B7 532 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 SFMBT1Q9UHJ3 866 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 STRIP2Q9ULQ0 834 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 NAALADL1Q9UQQ1 740 aa12.5□□□□□ -0.41
VPS13D-204ENST00000469054 SLC12A8A0AV02 714 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 E2F8A0AVK6 867 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 ARNTLO00327 626 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 DDX3XO00571 662 aaKnown RBP eCLIP12.49□□□□□ -0.41
VPS13D-204ENST00000469054 CAPN9O14815 690 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 HSF2BPO75031 334 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 GZMAP12544 262 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 SCNN1AP37088 669 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 ADKP55263 362 aaKnown RBP12.49□□□□□ -0.41
VPS13D-204ENST00000469054 SIGLEC14Q08ET2 396 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 PTP4A2Q12974 167 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 ARID5BQ14865 1188 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 TSR1Q2NL82 804 aaKnown RBP12.49□□□□□ -0.41
VPS13D-204ENST00000469054 ACAD10Q6JQN1 1059 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 PPP1R2P3Q6NXS1 205 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 MSANTD2Q6P1R3 559 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 DRC7Q8IY82 874 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 ZFYVE19Q96K21 471 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 DNAJC7Q99615 494 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 C11orf70Q9BRQ4 267 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 EPHX3Q9H6B9 360 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 DUS2Q9NX74 493 aaKnown RBP12.49□□□□□ -0.41
VPS13D-204ENST00000469054 ADAM22Q9P0K1 906 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 WNT16Q9UBV4 365 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 SH3BP1Q9Y3L3 701 aa12.49□□□□□ -0.41
VPS13D-204ENST00000469054 AKR1B15C9JRZ8 316 aaPredicted RBP12.48□□□□□ -0.41
VPS13D-204ENST00000469054 DLL1O00548 723 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 MFAP3LO75121 409 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 GRAP2O75791 330 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 STC2O76061 302 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 CALB1P05937 261 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 PLEKP08567 350 aaPredicted RBP12.48□□□□□ -0.41
VPS13D-204ENST00000469054 IRF1P10914 325 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 IFNAR2P48551 515 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 PDGFRLQ15198 375 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 DCAF6Q58WW2 860 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 SYPL2Q5VXT5 272 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 TRIM68Q6AZZ1 485 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 WDR59Q6PJI9 974 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 HTR3DQ70Z44 454 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 MON1BQ7L1V2 547 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 VPS36Q86VN1 386 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 CNGA4Q8IV77 575 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 DEFB106AQ8N104 65 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 CSGALNACT1Q8TDX6 532 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 DQX1Q8TE96 717 aaKnown RBP12.48□□□□□ -0.41
VPS13D-204ENST00000469054 DNASE1L2Q92874 299 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 WBP2Q969T9 261 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 ASIC4Q96FT7 647 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 SLC2A13Q96QE2 648 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 LINC00597Q9H2U6 94 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 ABHD10Q9NUJ1 306 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 ZNHIT6Q9NWK9 470 aaKnown RBP12.48□□□□□ -0.41
VPS13D-204ENST00000469054 TAS2R14Q9NYV8 317 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 ARHGAP20Q9P2F6 1191 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 WDR35Q9P2L0 1181 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 TBC1D14Q9P2M4 693 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 ADAMTS1Q9UHI8 967 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 LSM7Q9UK45 103 aaKnown RBP12.48□□□□□ -0.41
VPS13D-204ENST00000469054 FBXL21Q9UKT6 434 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 HBS1LQ9Y450 684 aaKnown RBP12.48□□□□□ -0.41
VPS13D-204ENST00000469054 WNT6Q9Y6F9 365 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 MYH10P35580 1976 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 PATJQ8NI35 1801 aa12.48□□□□□ -0.41
VPS13D-204ENST00000469054 TTC28Q96AY4 2481 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 GOLGA8SH3BPF8 625 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 SLC9A3R1O14745 358 aaPredicted RBP12.47□□□□□ -0.41
VPS13D-204ENST00000469054 SCAMP3O14828 347 aaKnown RBP12.47□□□□□ -0.41
VPS13D-204ENST00000469054 GREM1O60565 184 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 DAB1O75553 588 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 ADCY5O95622 1261 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 HMBSP08397 361 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 NOS2P35228 1153 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 KPNA1P52294 538 aaPredicted RBP12.47□□□□□ -0.41
VPS13D-204ENST00000469054 GSCP56915 257 aaPredicted RBP12.47□□□□□ -0.41
VPS13D-204ENST00000469054 RNASE9P60153 205 aaKnown RBP12.47□□□□□ -0.41
VPS13D-204ENST00000469054 TNK2Q07912 1038 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 RUNX3Q13761 415 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 TRIP4Q15650 581 aaPredicted RBP12.47□□□□□ -0.41
VPS13D-204ENST00000469054 EML3Q32P44 896 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 SLC44A4Q53GD3 710 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 FAM102AQ5T9C2 384 aaPredicted RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms