RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 GNL1P36915 607 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 MAGEA11P43364 429 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 CDR1P51861 262 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 INCA1Q0VD86 236 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 MAPRE1Q15691 268 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 VWA3BQ502W6 1294 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 C4orf50Q6ZRC1 276 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 LPCAT2Q7L5N7 544 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 ZNF605Q86T29 641 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 SPATA2LQ8IUW3 424 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 SLC39A7Q92504 469 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 EZH1Q92800 747 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 TATDN2Q93075 761 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 CEP295NLQ96MC4 621 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 SYT15Q9BQS2 421 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 SLC46A2Q9BY10 475 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 SMG9Q9H0W8 520 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 HSD3B7Q9H2F3 369 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 NDST4Q9H3R1 872 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 FAM124BQ9H5Z6 455 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 GCNT4Q9P109 453 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 UXTQ9UBK9 157 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 SLC6A14Q9UN76 642 aa12.6□□□□□ -0.39
SQSTM1-206ENST00000466342 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 BECN2A8MW95 431 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 A8MXQ7 604 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 MAP3K13O43283 966 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 PDGFRBP09619 1106 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 CD59P13987 128 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 TBXAS1P24557 533 aaPredicted RBP12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 GJA4P35212 333 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 PSMC1P62191 440 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 CYP4F8P98187 520 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 CUL2Q13617 745 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 IQCB1Q15051 598 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 KRT31Q15323 416 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 DUOXA1Q1HG43 343 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 SPDYCQ5MJ68 293 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 ANO7Q6IWH7 933 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 VSTM1Q6UX27 236 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 GBP6Q6ZN66 633 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 TMEM150AQ86TG1 271 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 UNC93AQ86WB7 457 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 TMEFF1Q8IYR6 380 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 CMTM8Q8IZV2 173 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 TTC39CQ8N584 583 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 PNPLA1Q8N8W4 532 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 EHBP1Q8NDI1 1231 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 ANKRD20A12PQ8NF67 263 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 CCDC26Q8TAB7 109 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 OLIG1Q8TAK6 271 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 CD101Q93033 1021 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 TRMT2BQ96GJ1 504 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 MYRFLQ96LU7 910 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 NT5C1BQ96P26 610 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 ARID3AQ99856 593 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 GTPBP2Q9BX10 602 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 INTS2Q9H0H0 1204 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 DPEP3Q9H4B8 488 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 TAB2Q9NYJ8 693 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 PILRBQ9UKJ0 227 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 PCDHB9Q9Y5E1 797 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 RAI2Q9Y5P3 530 aa12.59□□□□□ -0.39
SQSTM1-206ENST00000466342 ATP2C2O75185 946 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 NOL4O94818 638 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 CFIP05156 583 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 TPM2P07951 284 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 FTH1P19P0C7X4 201 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 ARSAP15289 507 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 HOXD12P35452 270 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 AVPR1AP37288 418 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 P2RY2P41231 377 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 PTGER3P43115 390 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 NDST1P52848 882 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 GFPT1Q06210 699 aaPredicted RBP12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 LRMPQ12912 555 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 DDR2Q16832 855 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 EXOC3L4Q17RC7 722 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 PEAR1Q5VY43 1037 aaPredicted RBP12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 NAIF1Q69YI7 327 aaPredicted RBP12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 TRIM65Q6PJ69 517 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 ARMCX6Q7L4S7 300 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 B3GALNT2Q8NCR0 500 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 CEP76Q8TAP6 659 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 MRPS31Q92665 395 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 CRELD1Q96HD1 420 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 TNIP3Q96KP6 325 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 CRACR2AQ9BSW2 395 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 KIF9Q9HAQ2 790 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 CBX8Q9HC52 389 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 CRTAC1Q9NQ79 661 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 HMGXB4Q9UGU5 601 aa12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 LIMA1Q9UHB6 759 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 MAGED2Q9UNF1 606 aaPredicted RBP12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 HELZP42694 1942 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-206ENST00000466342 A0A087WV48 116 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 LRRC10BA6NIK2 292 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 PES1O00541 588 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 CILPO75339 1184 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 SERPINF2P08697 491 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms