RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ZMIZ2Q8NF64 920 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 NETO1Q8TDF5 533 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 GAB3Q8WWW8 586 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 TFAP2BQ92481 460 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 CD101Q93033 1021 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 NAP1L5Q96NT1 182 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-205ENST00000465238 STK33Q9BYT3 514 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 AJAP1Q9UKB5 411 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-205ENST00000465238 TSPAN16Q9UKR8 245 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.65■□□□□ 0.58
COL7A1-205ENST00000465238 O00370 1275 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 MED7O43513 233 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 RPP40O75818 363 aaKnown RBP18.64■□□□□ 0.57
COL7A1-205ENST00000465238 BRD2P25440 801 aaKnown RBP18.64■□□□□ 0.57
COL7A1-205ENST00000465238 YWHAQP27348 245 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 UBASH3AP57075 661 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 POLR2FP61218 127 aaKnown RBP18.64■□□□□ 0.57
COL7A1-205ENST00000465238 USP46P62068 366 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 PTK2Q05397 1052 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 IFRD2Q12894 506 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-205ENST00000465238 LCLAT1Q6UWP7 414 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 PRR23CQ6ZRP0 262 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 KIAA1958Q8N8K9 716 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 NAA15Q9BXJ9 866 aaKnown RBP18.64■□□□□ 0.57
COL7A1-205ENST00000465238 GANQ9H2C0 597 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 COMMD8Q9NX08 183 aa18.64■□□□□ 0.57
COL7A1-205ENST00000465238 ZNF840PA6NDX5 716 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 TNFRSF10BO14763 440 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 CYP26A1O43174 497 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 THAP12O43422 761 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 NFATC1O95644 943 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 CALCAP01258 141 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 GNA15P30679 374 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 PXNP49023 591 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-205ENST00000465238 SLC5A3P53794 718 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 BCAT1P54687 386 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 BPIFB4P59827 614 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 NR1I3Q14994 352 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 NAIF1Q69YI7 327 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-205ENST00000465238 CACNA2D4Q7Z3S7 1137 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 CCDC26Q8TAB7 109 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 UBA3Q8TBC4 463 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 ACDQ96AP0 544 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 LOXL4Q96JB6 756 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 SLITRK1Q96PX8 696 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 UBXN6Q9BZV1 441 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 PNPLA8Q9NP80 782 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 NLRC4Q9NPP4 1024 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.63■□□□□ 0.57
COL7A1-205ENST00000465238 MYO16Q9Y6X6 1858 aa18.63■□□□□ 0.57
COL7A1-205ENST00000465238 EML5Q05BV3 1969 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-205ENST00000465238 A0A1W2PQC6 194 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 SLC30A4O14863 429 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 SLC7A9P82251 487 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 PDE4CQ08493 712 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 BST2Q10589 180 aaKnown RBP18.62■□□□□ 0.57
COL7A1-205ENST00000465238 SYT13Q7L8C5 426 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 TTC30AQ86WT1 665 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 FAM71AQ8IYT1 594 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 RPLP0P6Q8NHW5 317 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 SCAMP5Q8TAC9 235 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 ZNF606Q8WXB4 792 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 SPAG5Q96R06 1193 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 ZSWIM1Q9BR11 485 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 ANP32EQ9BTT0 268 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 LINC00597Q9H2U6 94 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 FBXO44Q9H4M3 255 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 KIAA1549LQ6ZVL6 1849 aa18.62■□□□□ 0.57
COL7A1-205ENST00000465238 TPRP12270 2363 aaKnown RBP18.61■□□□□ 0.57
COL7A1-205ENST00000465238 DCDC2BA2VCK2 349 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 HHLA1C9JL84 531 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 M0QYV0 167 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 LEFTY2O00292 366 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 XPO1O14980 1071 aaKnown RBP18.61■□□□□ 0.57
COL7A1-205ENST00000465238 EPHB6O15197 1021 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 OLFM2O95897 454 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 PNMA6AP0CW24 399 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-205ENST00000465238 SETSIPP0DME0 302 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 CLCN1P35523 988 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 ZXDBP98169 803 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 TAF10Q12962 218 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 PDZD8Q8NEN9 1154 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 EZH1Q92800 747 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-205ENST00000465238 FBXO32Q969P5 355 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 ACP6Q9NPH0 428 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 IL37Q9NZH6 218 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 IFNKQ9P0W0 207 aa18.61■□□□□ 0.57
COL7A1-205ENST00000465238 F8VZ95 297 aa18.6■□□□□ 0.57
COL7A1-205ENST00000465238 SLC9A3R1O14745 358 aaPredicted RBP18.6■□□□□ 0.57
COL7A1-205ENST00000465238 AXIN1O15169 862 aa18.6■□□□□ 0.57
COL7A1-205ENST00000465238 ABL1P00519 1130 aa18.6■□□□□ 0.57
COL7A1-205ENST00000465238 OAS1P00973 400 aaKnown RBP18.6■□□□□ 0.57
COL7A1-205ENST00000465238 TPM3P06753 285 aa18.6■□□□□ 0.57
COL7A1-205ENST00000465238 STAT1P42224 750 aa18.6■□□□□ 0.57
COL7A1-205ENST00000465238 KBTBD6Q86V97 674 aa18.6■□□□□ 0.57
COL7A1-205ENST00000465238 PIGZQ86VD9 579 aa18.6■□□□□ 0.57
COL7A1-205ENST00000465238 OVCA2Q8WZ82 227 aa18.6■□□□□ 0.57
COL7A1-205ENST00000465238 ZC3H10Q96K80 434 aaKnown RBP18.6■□□□□ 0.57
COL7A1-205ENST00000465238 HHIPQ96QV1 700 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms