RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 LHX5Q9H2C1 402 aa18.35■□□□□ 0.53
CPSF4-209ENST00000465132 CSNK1G1Q9HCP0 422 aa18.35■□□□□ 0.53
CPSF4-209ENST00000465132 CYLDQ9NQC7 956 aa18.35■□□□□ 0.53
CPSF4-209ENST00000465132 GKN1Q9NS71 199 aa18.35■□□□□ 0.53
CPSF4-209ENST00000465132 TMLHEQ9NVH6 421 aa18.35■□□□□ 0.53
CPSF4-209ENST00000465132 UXTQ9UBK9 157 aaPredicted RBP18.35■□□□□ 0.53
CPSF4-209ENST00000465132 AJAP1Q9UKB5 411 aaPredicted RBP18.35■□□□□ 0.53
CPSF4-209ENST00000465132 NME7Q9Y5B8 376 aa18.35■□□□□ 0.53
CPSF4-209ENST00000465132 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.35■□□□□ 0.53
CPSF4-209ENST00000465132 DCDC2BA2VCK2 349 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 M0QYV0 167 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 MFAP3LO75121 409 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 HMGA1P17096 107 aaKnown RBP18.34■□□□□ 0.53
CPSF4-209ENST00000465132 BRD2P25440 801 aaKnown RBP18.34■□□□□ 0.53
CPSF4-209ENST00000465132 HNRNPH3P31942 346 aaKnown RBP18.34■□□□□ 0.53
CPSF4-209ENST00000465132 PRKCIP41743 596 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 ACADSBP45954 432 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 TBX2Q13207 712 aaPredicted RBP18.34■□□□□ 0.53
CPSF4-209ENST00000465132 ARID5BQ14865 1188 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 EPS8L1Q8TE68 723 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 STK32AQ8WU08 396 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 DNAJC7Q99615 494 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 FAM83CQ9BQN1 747 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 FBXO44Q9H4M3 255 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 SEMA4GQ9NTN9 838 aa18.34■□□□□ 0.53
CPSF4-209ENST00000465132 XPO1O14980 1071 aaKnown RBP18.33■□□□□ 0.52
CPSF4-209ENST00000465132 F11P03951 625 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 TNFAIP3P21580 790 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 DDX6P26196 483 aaKnown RBP eCLIP18.33■□□□□ 0.52
CPSF4-209ENST00000465132 HOXC13P31276 330 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 AVPR1AP37288 418 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 PPP3CCP48454 512 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 TDRD12Q587J7 1177 aaKnown RBP18.33■□□□□ 0.52
CPSF4-209ENST00000465132 MAB21L3Q8N8X9 362 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 NETO1Q8TDF5 533 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 USP13Q92995 863 aaPredicted RBP18.33■□□□□ 0.52
CPSF4-209ENST00000465132 HSFY1Q96LI6 401 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 AGPAT1Q99943 283 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 ABHD10Q9NUJ1 306 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 CCL26Q9Y258 94 aa18.33■□□□□ 0.52
CPSF4-209ENST00000465132 GPR15P49685 360 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 MAP3K7CLP57077 242 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 CDK17Q00537 523 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 RUNX3Q13761 415 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 CSRP2Q16527 193 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 TXNDC8Q6A555 127 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 CLEC20AQ6ZU45 233 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 DENND5BQ6ZUT9 1274 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 IRF2BP2Q7Z5L9 587 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 WDR5BQ86VZ2 330 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 NUP93Q8N1F7 819 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 TFAP2BQ92481 460 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 PANX2Q96RD6 677 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 TRIM62Q9BVG3 475 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 DEF6Q9H4E7 631 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 LRRC4Q9HBW1 653 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 HPS4Q9NQG7 708 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 TDP1Q9NUW8 608 aa18.32■□□□□ 0.52
CPSF4-209ENST00000465132 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 OTOL1A6NHN0 477 aaPredicted RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 SOBPA7XYQ1 873 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 F8VP50 259 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 CLDN5O00501 218 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 SLC30A4O14863 429 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 SART1O43290 800 aaKnown RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 PNMA6AP0CW24 399 aaPredicted RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 PLA2G4AP47712 749 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 TMEM196Q5HYL7 178 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 TRIM68Q6AZZ1 485 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 FSTL4Q6MZW2 842 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 PKN3Q6P5Z2 889 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 PRR23CQ6ZRP0 262 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 PAQR9Q6ZVX9 377 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 CEP68Q76N32 757 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 NOP9Q86U38 636 aaKnown RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 MON1AQ86VX9 555 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 FAM160A2Q8N612 972 aaPredicted RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 PDZD8Q8NEN9 1154 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 IPO4Q8TEX9 1081 aaKnown RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 KCTD13Q8WZ19 329 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 CHFRQ96EP1 664 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 TRMT2BQ96GJ1 504 aaKnown RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 SLITRK1Q96PX8 696 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 EBF3Q9H4W6 596 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 SYNCQ9H7C4 482 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 KIF9Q9HAQ2 790 aa18.31■□□□□ 0.52
CPSF4-209ENST00000465132 SEPT11Q9NVA2 429 aaKnown RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 NOCTQ9UK39 431 aaKnown RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 MAGED2Q9UNF1 606 aaPredicted RBP18.31■□□□□ 0.52
CPSF4-209ENST00000465132 TRDMT1O14717 391 aaKnown RBP18.3■□□□□ 0.52
CPSF4-209ENST00000465132 FBXO21O94952 628 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 NSFP46459 744 aaKnown RBP18.3■□□□□ 0.52
CPSF4-209ENST00000465132 ADKP55263 362 aaKnown RBP18.3■□□□□ 0.52
CPSF4-209ENST00000465132 PDE4CQ08493 712 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 GRSF1Q12849 480 aaKnown RBP eCLIP18.3■□□□□ 0.52
CPSF4-209ENST00000465132 DDR2Q16832 855 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 SDHAF4Q5VUM1 108 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 SIX6OS1Q8N1H7 587 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 ARHGAP18Q8N392 663 aa18.3■□□□□ 0.52
CPSF4-209ENST00000465132 STKLD1Q8NE28 680 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms