RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 DRG1Q9Y295 367 aaKnown RBP12.42□□□□□ -0.42
SMPD4-213ENST00000454468 IGKV6-21A0A0C4DH24 114 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 A0A1B0GUA9 196 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 C2CD4BA6NLJ0 364 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 MEIS3P2A8K0S8 358 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 TPH1P17752 444 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 DUSP28Q4G0W2 176 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 C16orf46Q6P387 395 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 PRPF39Q86UA1 669 aaKnown RBP12.41□□□□□ -0.42
SMPD4-213ENST00000454468 PCDH19Q8TAB3 1148 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 L3MBTL3Q96JM7 780 aaPredicted RBP12.41□□□□□ -0.42
SMPD4-213ENST00000454468 TSSK1BQ9BXA7 367 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 KRT82Q9NSB4 513 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 DDIT4Q9NX09 232 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 ARMCX1Q9P291 453 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 SSC5DA1L4H1 1573 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 PRRC2BQ5JSZ5 2229 aaKnown RBP12.41□□□□□ -0.42
SMPD4-213ENST00000454468 ABLIM1O14639 778 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 AP1G2O75843 785 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 CSPG5O95196 566 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 TOP3BO95985 862 aaKnown RBP12.41□□□□□ -0.42
SMPD4-213ENST00000454468 NR1H3Q13133 447 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 SOWAHAQ2M3V2 549 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 ZNF75CPQ92670 426 aaPredicted RBP12.41□□□□□ -0.42
SMPD4-213ENST00000454468 NKD2Q969F2 451 aaPredicted RBP12.41□□□□□ -0.42
SMPD4-213ENST00000454468 CENPTQ96BT3 561 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 TRIM55Q9BYV6 548 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 MANSC1Q9H8J5 431 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 ETNK2Q9NVF9 386 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 USP17L7P0C7H9 530 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 CDC25CP30307 473 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 TKTL1P51854 596 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 ARFIP2P53365 341 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 LCLAT1Q6UWP7 414 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 NUDCD3Q8IVD9 361 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 TMEM40Q8WWA1 233 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 TNIP3Q96KP6 325 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 MYLK2Q9H1R3 596 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 SMG5Q9UPR3 1016 aaKnown RBP12.41□□□□□ -0.42
SMPD4-213ENST00000454468 FIS1Q9Y3D6 152 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 SNX10Q9Y5X0 201 aa12.41□□□□□ -0.42
SMPD4-213ENST00000454468 WDR27A2RRH5 827 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 CHUKO15111 745 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 STRNO43815 780 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 IGFBP6P24592 240 aaPredicted RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 C9orf57Q5W0N0 161 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 IL31Q6EBC2 164 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 TRNP1Q6NT89 227 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 POLNQ7Z5Q5 900 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 ARID3BQ8IVW6 561 aaPredicted RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 SLCO2A1Q92959 643 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 ZNF560Q96MR9 790 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 RHOBTB2Q9BYZ6 727 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 NOD2Q9HC29 1040 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 PRM3Q9NNZ6 103 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 DDX43Q9NXZ2 648 aaKnown RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 HEY2Q9UBP5 337 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 FNDC3AQ9Y2H6 1198 aaKnown RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 CLUHO75153 1309 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 KDSRQ06136 332 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 BST2Q10589 180 aaKnown RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 TAF1BQ53T94 588 aaPredicted RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 TRMT10BQ6PF06 316 aaKnown RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 RAPH1Q70E73 1250 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 CCDC125Q86Z20 511 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 STKLD1Q8NE28 680 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 HIPK4Q8NE63 616 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 KCNK16Q96T55 309 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 KDM4CQ9H3R0 1056 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 KCNH4Q9UQ05 1017 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 PHIPQ8WWQ0 1821 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 DNAJC25-GNG10A0A024R161 153 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 RRN3P2A6NIE6 340 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 DFFAO00273 331 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 BCAT1P54687 386 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 DCAF4L1Q3SXM0 396 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 EFHC2Q5JST6 749 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 NLRP9Q7RTR0 991 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 ECHDC2Q86YB7 292 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 CDKL3Q8IVW4 592 aaPredicted RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 MPP5Q8N3R9 675 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 BCO2Q9BYV7 579 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 NRDE2Q9H7Z3 1164 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 ZNF395Q9H8N7 513 aaPredicted RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 RABGEF1Q9UJ41 708 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 ABT1Q9ULW3 272 aaKnown RBP12.4□□□□□ -0.42
SMPD4-213ENST00000454468 CNTN6Q9UQ52 1028 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 C2CD2Q9Y426 696 aa12.4□□□□□ -0.42
SMPD4-213ENST00000454468 C17orf102A2RUQ5 167 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 EEF2KO00418 725 aaKnown RBP12.39□□□□□ -0.43
SMPD4-213ENST00000454468 SPTLC1O15269 473 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 GHRP10912 638 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 GMPRP36959 345 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 ITIH4Q14624 930 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 CHI3L2Q15782 390 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 CFAP157Q5JU67 520 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 C6orf89Q6UWU4 347 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 COLGALT1Q8NBJ5 622 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 FOXP3Q9BZS1 431 aa12.39□□□□□ -0.43
SMPD4-213ENST00000454468 KIF1CO43896 1103 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms