RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 HESX1Q9UBX0 185 aa13.55□□□□□ -0.24
CHD3-206ENST00000452447 PI4KAP42356 2102 aa13.55□□□□□ -0.24
CHD3-206ENST00000452447 ANTXRLA6NF34 631 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 NEDD8-MDP1E9PL57 170 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 MDM4O15151 490 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 EPN2O95208 641 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 KLF8O95600 359 aaPredicted RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 CD44P16070 742 aaKnown RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 ANP32AP39687 249 aaKnown RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 KIR2DL1P43626 348 aaPredicted RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 BCAT1P54687 386 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 COG7P83436 770 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 GOLGA7BQ2TAP0 167 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 PLK5Q496M5 336 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 EMC10Q5UCC4 262 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 RSRC2Q7L4I2 434 aaKnown RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 TRMT11Q7Z4G4 463 aaKnown RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 SCD5Q86SK9 330 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 C11orf74Q86VG3 221 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 ZNF513Q8N8E2 541 aaPredicted RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 C12orf50Q8NA57 414 aaPredicted RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 NELFBQ8WX92 580 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 CNOT6LQ96LI5 555 aaKnown RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 RTKNQ9BST9 563 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 DNAJC17Q9NVM6 304 aaKnown RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 TSPAN16Q9UKR8 245 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 PCDHGA5Q9Y5G8 931 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 SGK1O00141 431 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 BIN1O00499 593 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 DCLK1O15075 740 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 GREM1O60565 184 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 GADD45BO75293 160 aaPredicted RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 TYRP14679 529 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 TKTL1P51854 596 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 EFEMP1Q12805 493 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 RAB41Q5JT25 222 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 C10orf76Q5T2E6 689 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 GRAMD4Q6IC98 578 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 TMEM92Q6UXU6 159 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 RASSF3Q86WH2 238 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 PHTF2Q8N3S3 785 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 TERB1Q8NA31 727 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 MDGA1Q8NFP4 955 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 KCNV2Q8TDN2 545 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 NT5C1BQ96P26 610 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 IPO9Q96P70 1041 aaKnown RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 DUSP15Q9H1R2 295 aaPredicted RBP13.54□□□□□ -0.24
CHD3-206ENST00000452447 LRRC4Q9HBW1 653 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 ZDHHC4Q9NPG8 344 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 BCCIPQ9P287 314 aaKnown RBP eCLIP13.54□□□□□ -0.24
CHD3-206ENST00000452447 RASAL2Q9UJF2 1139 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 INVSQ9Y283 1065 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 ZNF510Q9Y2H8 683 aa13.54□□□□□ -0.24
CHD3-206ENST00000452447 PPP1R3GB7ZBB8 358 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 STC2O76061 302 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 GNA14O95837 355 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 ZBED1O96006 694 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 ZNF806P0C7X5 589 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 VDRP11473 427 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 BMP6P22004 513 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 YWHAGP61981 247 aaKnown RBP eCLIP13.53□□□□□ -0.24
CHD3-206ENST00000452447 PDE4CQ08493 712 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 BST2Q10589 180 aaKnown RBP13.53□□□□□ -0.24
CHD3-206ENST00000452447 MORC3Q14149 939 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 CCDC6Q16204 474 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 AASDHQ4L235 1098 aaPredicted RBP13.53□□□□□ -0.24
CHD3-206ENST00000452447 TTI2Q6NXR4 508 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 FOXR2Q6PJQ5 311 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 TMEM270Q6UE05 265 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 PGBD3Q8N328 593 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 PPM1KQ8N3J5 372 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 DCLK3Q9C098 648 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 MARK1Q9P0L2 795 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 KIAA1257Q9ULG3 409 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 STRIP2Q9ULQ0 834 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 CIZ1Q9ULV3 898 aaPredicted RBP13.53□□□□□ -0.24
CHD3-206ENST00000452447 CTNND2Q9UQB3 1225 aa13.53□□□□□ -0.24
CHD3-206ENST00000452447 DCDC2BA2VCK2 349 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 XPO1O14980 1071 aaKnown RBP13.52□□□□□ -0.25
CHD3-206ENST00000452447 TRIM24O15164 1050 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 PMM2O15305 246 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 P4HA2O15460 535 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 CACNG3O60359 315 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 GDF9O60383 454 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 HMBSP08397 361 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 CHKAP35790 457 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 MPLP40238 635 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 CREB5Q02930 508 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 SF3A2Q15428 464 aaKnown RBP13.52□□□□□ -0.25
CHD3-206ENST00000452447 Q6ZNB5 142 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 BHMTQ93088 406 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 SPACA7Q96KW9 195 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 ULBP1Q9BZM6 244 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 MARCH2Q9P0N8 246 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 PCDHB4Q9Y5E5 795 aa13.52□□□□□ -0.25
CHD3-206ENST00000452447 MED19A0JLT2 244 aaPredicted RBP13.51□□□□□ -0.25
CHD3-206ENST00000452447 SLC30A4O14863 429 aa13.51□□□□□ -0.25
CHD3-206ENST00000452447 ZBTB24O43167 697 aaPredicted RBP13.51□□□□□ -0.25
CHD3-206ENST00000452447 ADAM23O75077 832 aa13.51□□□□□ -0.25
CHD3-206ENST00000452447 PAEPP09466 180 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms