RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SERPINF1P36955 418 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 CASP2P42575 452 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 CARSP49589 748 aaKnown RBP4.76□□□□□ -1.65
VPS29-202ENST00000447578 FOXO1Q12778 655 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 EIF2B5Q13144 721 aaKnown RBP4.76□□□□□ -1.65
VPS29-202ENST00000447578 PTK2BQ14289 1009 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 KIF22Q14807 665 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 FAM153CQ494X1 144 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 LCE1EQ5T753 118 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 KIAA1614Q5VZ46 1190 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 TAPT1Q6NXT6 567 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 SLC30A10Q6XR72 485 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 RFX8Q6ZV50 586 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 ZNF365Q70YC5 407 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 GALNT15Q8N3T1 639 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 SLC15A4Q8N697 577 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 KAT6AQ92794 2004 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 CHST8Q9H2A9 424 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 KLC4Q9NSK0 619 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 CFAP97Q9P2B7 532 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.76□□□□□ -1.65
VPS29-202ENST00000447578 PAXBP1Q9Y5B6 917 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 SCINQ9Y6U3 715 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 CROCC2H7BZ55 1655 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 A0A1B0GVC2 190 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 RRN3P2A6NIE6 340 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 PRSS29PA6NIE9 313 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 CLCA1A8K7I4 914 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 E9PLN8 166 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 J3KRW8 73 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 ACKR2O00590 384 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 NCAM2O15394 837 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 RASSF9O75901 435 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 NDST3O95803 873 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 PRR35P0CG20 571 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 NR2F6P10588 404 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 NPTX2P47972 431 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 NXPH1P58417 271 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 SSBP2P81877 361 aaPredicted RBP4.75□□□□□ -1.65
VPS29-202ENST00000447578 ITIH3Q06033 890 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 G3BP1Q13283 466 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS29-202ENST00000447578 HLXQ14774 488 aaPredicted RBP4.75□□□□□ -1.65
VPS29-202ENST00000447578 RAB30Q15771 203 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 TIGD6Q17RP2 521 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 ZNF626Q68DY1 528 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 JMJD6Q6NYC1 403 aaPredicted RBP4.75□□□□□ -1.65
VPS29-202ENST00000447578 SUGP1Q8IWZ8 645 aaKnown RBP4.75□□□□□ -1.65
VPS29-202ENST00000447578 AOPEPQ8N6M6 819 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 DNAJC5GQ8N7S2 189 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 SEMA6DQ8NFY4 1073 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 CYP2W1Q8TAV3 490 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 RUBCNQ92622 972 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 USP13Q92995 863 aaPredicted RBP4.75□□□□□ -1.65
VPS29-202ENST00000447578 PPM1MQ96MI6 270 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 TRIB1Q96RU8 372 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 VKORC1Q9BQB6 163 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 MAGEB5Q9BZ81 275 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS29-202ENST00000447578 FLRT1Q9NZU1 646 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 PDP2Q9P2J9 529 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 ZNF212Q9UDV6 495 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 CCDC141Q6ZP82 1450 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 MBD5Q9P267 1494 aa4.75□□□□□ -1.65
VPS29-202ENST00000447578 ARHGEF5Q12774 1597 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 SAMD9LQ8IVG5 1584 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 SPATA31E1Q6ZUB1 1445 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 ARHGAP5Q13017 1502 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 FAM234BA2RU67 622 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 AQP12BA6NM10 295 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 LINC01548A6NM66 108 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 TMEM233B4DJY2 109 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 SYT5O00445 386 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 TRIM38O00635 465 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 PIP5K1BO14986 540 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 URI1O94763 535 aaPredicted RBP4.74□□□□□ -1.65
VPS29-202ENST00000447578 UNC5CO95185 931 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 TTLL1O95922 423 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 RARBP10826 455 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 VEGFAP15692 232 aaPredicted RBP4.74□□□□□ -1.65
VPS29-202ENST00000447578 PSMC1P62191 440 aaKnown RBP4.74□□□□□ -1.65
VPS29-202ENST00000447578 POU6F2P78424 691 aaPredicted RBP4.74□□□□□ -1.65
VPS29-202ENST00000447578 PIGFQ07326 219 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 AMOTQ4VCS5 1084 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 CCDC184Q52MB2 194 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 INTS11Q5TA45 600 aaKnown RBP4.74□□□□□ -1.65
VPS29-202ENST00000447578 KRTAP5-1Q6L8H4 278 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 RSRC2Q7L4I2 434 aaKnown RBP4.74□□□□□ -1.65
VPS29-202ENST00000447578 YAF2Q8IY57 180 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 GLIS1Q8NBF1 620 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 OR56A3Q8NH54 315 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 IPO4Q8TEX9 1081 aaKnown RBP4.74□□□□□ -1.65
VPS29-202ENST00000447578 RFKQ969G6 155 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 ZBTB9Q96C00 473 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 SNX27Q96L92 541 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 GDF15Q99988 308 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 SMOC2Q9H3U7 446 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 PRKRIP1Q9H875 184 aaPredicted RBP4.74□□□□□ -1.65
VPS29-202ENST00000447578 MRPS18AQ9NVS2 196 aaKnown RBP4.74□□□□□ -1.65
VPS29-202ENST00000447578 DKK3Q9UBP4 350 aa4.74□□□□□ -1.65
VPS29-202ENST00000447578 SERGEFQ9UGK8 458 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms