RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 LRRC71Q8N4P6 559 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 HASPINQ8TF76 798 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 DDB2Q92466 427 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 RILPL2Q969X0 211 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 MCRS1Q96EZ8 462 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 MYLK2Q9H1R3 596 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 FAM83DQ9H4H8 585 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 NECTIN3Q9NQS3 549 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 FSCN3Q9NQT6 498 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 DNAJB11Q9UBS4 358 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 ADAM21Q9UKJ8 722 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 SLC27A6Q9Y2P4 619 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 DTNAQ9Y4J8 743 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 J3KTA2 159 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 SYT5O00445 386 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 EXOC5O00471 708 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 PCDH17O14917 1159 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 SLC16A3O15427 465 aaKnown RBP4.09□□□□□ -1.75
VPS41-207ENST00000439468 ZSCAN9O15535 394 aaPredicted RBP4.09□□□□□ -1.75
VPS41-207ENST00000439468 TLR5O60602 858 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 IDEP14735 1019 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 NPPBP16860 134 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 HTR7P34969 479 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 PBX1P40424 430 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 ATXN1P54253 815 aaKnown RBP4.09□□□□□ -1.75
VPS41-207ENST00000439468 TIRAPP58753 221 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 C4orf46Q504U0 113 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 MRNIPQ6NTE8 343 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 DTX2Q86UW9 622 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 SCAMP5Q8TAC9 235 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 STT3BQ8TCJ2 826 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 XAGE5Q8WWM1 108 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 GRAMD1AQ96CP6 724 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 SCLT1Q96NL6 688 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 SLC29A3Q9BZD2 475 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 GLOD4Q9HC38 313 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 AGO4Q9HCK5 861 aaKnown RBP4.09□□□□□ -1.75
VPS41-207ENST00000439468 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.09□□□□□ -1.75
VPS41-207ENST00000439468 RIMKLBQ9ULI2 386 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 USP22Q9UPT9 525 aa4.09□□□□□ -1.75
VPS41-207ENST00000439468 DRG1Q9Y295 367 aaKnown RBP4.09□□□□□ -1.75
VPS41-207ENST00000439468 SMIM22K7EJ46 135 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 AP4M1O00189 453 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 CCNT2O60583 730 aaKnown RBP4.08□□□□□ -1.76
VPS41-207ENST00000439468 TAF5LO75529 589 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 PRKCGP05129 697 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 ANXA6P08133 673 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 ITGA5P08648 1049 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 IL6RP08887 468 aaPredicted RBP4.08□□□□□ -1.76
VPS41-207ENST00000439468 FAM163BP0C2L3 166 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 PEPDP12955 493 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 ENGP17813 658 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 ITPKBP27987 946 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 EPHA3P29320 983 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 CYP2C18P33260 490 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 PNLIPRP1P54315 467 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 EEFSECP57772 596 aaKnown RBP4.08□□□□□ -1.76
VPS41-207ENST00000439468 TIAL1Q01085 375 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS41-207ENST00000439468 NSUN2Q08J23 767 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS41-207ENST00000439468 ATP1A4Q13733 1029 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 SRSF7Q16629 238 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS41-207ENST00000439468 BTBD16Q32M84 506 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 TMEM95Q3KNT9 176 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 GRHL2Q6ISB3 625 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 CEP85Q6P2H3 762 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 USP17L6PQ6QN14 398 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 RRAGAQ7L523 313 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 RASGRP3Q8IV61 690 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 SRRM1Q8IYB3 904 aaKnown RBP4.08□□□□□ -1.76
VPS41-207ENST00000439468 FSTL5Q8N475 847 aaPredicted RBP4.08□□□□□ -1.76
VPS41-207ENST00000439468 SPATA5Q8NB90 893 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 SUN3Q8TAQ9 357 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 PRR11Q96HE9 360 aaPredicted RBP4.08□□□□□ -1.76
VPS41-207ENST00000439468 PAGR1Q9BTK6 254 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 KATNAL1Q9BW62 490 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 VN1R3Q9BXE9 311 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 TMEM120AQ9BXJ8 343 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 SERTAD4Q9NUC0 356 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 SAGE1Q9NXZ1 904 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 TMOD4Q9NZQ9 345 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 ASAP1Q9ULH1 1129 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 DGKBQ9Y6T7 804 aa4.08□□□□□ -1.76
VPS41-207ENST00000439468 PNMA6EA0A0J9YXQ4 647 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 OR2W5A6NFC9 320 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 B9A039 149 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 DHHO43323 396 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 NTSR2O95665 410 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 JUPP14923 745 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 PAX3P23760 479 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 AKT1P31749 480 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 DEUP1Q05D60 604 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 SLC10A2Q12908 348 aaPredicted RBP4.07□□□□□ -1.76
VPS41-207ENST00000439468 MTAPQ13126 283 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 PRKG1Q13976 671 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 EZH2Q15910 746 aaKnown RBP4.07□□□□□ -1.76
VPS41-207ENST00000439468 CYP1B1Q16678 543 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 PCID2Q5JVF3 399 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 ARL6IP4Q66PJ3 421 aaKnown RBP4.07□□□□□ -1.76
VPS41-207ENST00000439468 RINT1Q6NUQ1 792 aa4.07□□□□□ -1.76
VPS41-207ENST00000439468 NAPRTQ6XQN6 538 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms