RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MTMR3Q13615 1198 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 KRT81Q14533 505 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 LONRF2Q1L5Z9 754 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 SMTNL2Q2TAL5 461 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 SH3PXD2AQ5TCZ1 1133 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 BHLHA9Q7RTU4 235 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 SPRED2Q7Z698 418 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 TADA2BQ86TJ2 420 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 EXD1Q8NHP7 514 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 ARNTL2Q8WYA1 636 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 HSPH1Q92598 858 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 RNF34Q969K3 372 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 RPGRIP1Q96KN7 1286 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 ZNF512Q96ME7 567 aaPredicted RBP17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 CDK5RAP1Q96SZ6 601 aaKnown RBP17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 NPY6RQ99463 290 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 CERS4Q9HA82 394 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 OLA1Q9NTK5 396 aaKnown RBP17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 KLHL11Q9NVR0 708 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 IL37Q9NZH6 218 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 FBXW11Q9UKB1 542 aa17.86■□□□□ 0.45
CCDC28B-202ENST00000421922 GOLGA6L10A0A0M3HER8 536 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 HIDE1A8MVS5 230 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 FSCN2O14926 492 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 SPATA31D3P0C874 917 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 DNAJB1P25685 340 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 BOLA3Q53S33 107 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 SYPL2Q5VXT5 272 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 SPATA31D4Q6ZUB0 917 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 CREG2Q8IUH2 290 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 RCOR2Q8IZ40 523 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 KCTD6Q8NC69 237 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 KREMEN2Q8NCW0 462 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 ACTRT1Q8TDG2 376 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 MAIP1Q8WWC4 291 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 OVCA2Q8WZ82 227 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 CENPIQ92674 756 aaPredicted RBP17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 MS4A14Q96JA4 679 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 TTLL2Q9BWV7 592 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 LMAN2LQ9H0V9 348 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 TMEM51Q9NW97 253 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 DPP7Q9UHL4 492 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 ASB3Q9Y575 518 aa17.85■□□□□ 0.45
CCDC28B-202ENST00000421922 MTCL1Q9Y4B5 1905 aaKnown RBP17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 FAM92AA1XBS5 289 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 FGGP02679 453 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 C8AP07357 584 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 PYGMP11217 842 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 TCF4P15884 667 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 HDAC4P56524 1084 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 ARL13BQ3SXY8 428 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 DCAF12L1Q5VU92 463 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 SCD5Q86SK9 330 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 TAC4Q86UU9 113 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 MAP7D3Q8IWC1 876 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 ADAM32Q8TC27 787 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 DQX1Q8TE96 717 aaKnown RBP17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 TEKT4Q8WW24 435 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 SERPINB11Q96P15 392 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 NACA2Q9H009 215 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 CLIC5Q9NZA1 410 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 TRPM5Q9NZQ8 1165 aa17.84■□□□□ 0.45
CCDC28B-202ENST00000421922 FYNP06241 537 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 RARGP13631 454 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 TFE3P19532 575 aaPredicted RBP17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 COPS2P61201 443 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 EFHC2Q5JST6 749 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 KCNT1Q5JUK3 1230 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 PPM1LQ5SGD2 360 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 FAM131BQ86XD5 332 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 RASGEF1CQ8N431 466 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 ARFGAP1Q8N6T3 406 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 NT5C3BQ969T7 300 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 RNF25Q96BH1 459 aaPredicted RBP17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 ACSF2Q96CM8 615 aaPredicted RBP17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 PGAP3Q96FM1 320 aaPredicted RBP17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 SMOC2Q9H3U7 446 aa17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 TTC7AQ9ULT0 858 aaPredicted RBP17.83■□□□□ 0.45
CCDC28B-202ENST00000421922 PI4K2BG5E9Z4 385 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 MDM4O15151 490 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 RARAP10276 462 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 IL1R2P27930 398 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 IRS1P35568 1242 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 PPP3CCP48454 512 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 AIF1P55008 147 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 CDH6P55285 790 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 C10orf120Q5SQS8 335 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 ERMARDQ5T6L9 678 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 CCDC70Q6NSX1 233 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 PPP2R3CQ969Q6 453 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 PSMG2Q969U7 264 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 TIFAQ96CG3 184 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 TRMT2BQ96GJ1 504 aaKnown RBP17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 GCNAQ96QF7 691 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 PEBP4Q96S96 227 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 SNRNP25Q9BV90 132 aaKnown RBP17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 CALN1Q9BXU9 219 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 PLEKHA4Q9H4M7 779 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms