RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CCDC47Q96A33 483 aaKnown RBP12.19□□□□□ -0.46
USP4-204ENST00000416417 HEXIM2Q96MH2 286 aaKnown RBP12.19□□□□□ -0.46
USP4-204ENST00000416417 IMPG2Q9BZV3 1241 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 CYLDQ9NQC7 956 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP4-204ENST00000416417 CALCOCO1Q9P1Z2 691 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 RASAL2Q9UJF2 1139 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 ANGPTL2Q9UKU9 493 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 STC2O76061 302 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 ZNF202O95125 648 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 KLKB1P03952 638 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 MYL1P05976 194 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 NTSR1P30989 418 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 KIF11P52732 1056 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 PNOCQ13519 176 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 ZCWPW2Q504Y3 356 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 C11orf74Q86VG3 221 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 CHPFQ8IZ52 775 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 GUF1Q8N442 669 aaKnown RBP12.18□□□□□ -0.46
USP4-204ENST00000416417 SPACA7Q96KW9 195 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 CYP3A43Q9HB55 503 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 TMEM8AQ9HCN3 771 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 TMEM9BQ9NQ34 198 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 CACNA2D2Q9NY47 1150 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 DNMT3LQ9UJW3 386 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 LSM7Q9UK45 103 aaKnown RBP12.18□□□□□ -0.46
USP4-204ENST00000416417 CYP8B1Q9UNU6 501 aa12.18□□□□□ -0.46
USP4-204ENST00000416417 KMT2BQ9UMN6 2715 aaPredicted RBP12.17□□□□□ -0.46
USP4-204ENST00000416417 TULP2O00295 520 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 MAPK13O15264 365 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 CACNG3O60359 315 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 CFIP05156 583 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 CISD3P0C7P0 127 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 NDUFV2P19404 249 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 DGKGP49619 791 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 RPL6Q02878 288 aaKnown RBP12.17□□□□□ -0.46
USP4-204ENST00000416417 EFEMP1Q12805 493 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 FOXC1Q12948 553 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 NFIL3Q16649 462 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 HSF5Q4G112 596 aaPredicted RBP12.17□□□□□ -0.46
USP4-204ENST00000416417 DAB2IPQ5VWQ8 1189 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 LYSMD4Q5XG99 296 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 Q6ZNB5 142 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 SLC4A11Q8NBS3 891 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 DEFB124Q8NES8 71 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 OR2I1PQ8NGU4 316 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 XPO6Q96QU8 1125 aaKnown RBP12.17□□□□□ -0.46
USP4-204ENST00000416417 DUSP16Q9BY84 665 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 CISHQ9NSE2 258 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 PCDHA5Q9Y5H7 936 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 EPG5Q9HCE0 2579 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 MYH10P35580 1976 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 NUP205Q92621 2012 aa12.17□□□□□ -0.46
USP4-204ENST00000416417 ENGP17813 658 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 RPL13P26373 211 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 PLA2G4AP47712 749 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 MXI1P50539 228 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 RAD23BP54727 409 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 ZNF252P-AS1Q0IIN9 211 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 CBWD6Q4V339 395 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 CBWD3Q5JTY5 395 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 CBWD5Q5RIA9 395 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 KRT39Q6A163 491 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 IPO4Q8TEX9 1081 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 CD248Q9HCU0 757 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 RAB20Q9NX57 234 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 WDR35Q9P2L0 1181 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 CLEC4EQ9ULY5 219 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 FRYQ5TBA9 3013 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 ACACBO00763 2458 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 CHD8Q9HCK8 2581 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 IGHV1OR15-9A0A0B4J2B8 117 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 A0A1W2PQ27 194 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 A0A1W2PQ64 194 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 A0A1W2PQD8 194 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 CORO1AP31146 461 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 PRCPP42785 496 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 PMS1P54277 932 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 GOLGA8FQ08AF8 430 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 GOLGA8DPQ0D2H9 430 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 LRMPQ12912 555 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 GEN1Q17RS7 908 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 DCAF17Q5H9S7 520 aaPredicted RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 TCERG1LQ5VWI1 586 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 KIAA1324Q6UXG2 1013 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 CCDC186Q7Z3E2 898 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 TRMT11Q7Z4G4 463 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 PIGZQ86VD9 579 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 SYT12Q8IV01 421 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 SLC41A1Q8IVJ1 513 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 CCDC150Q8NCX0 1101 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 TMEM176AQ96HP8 235 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 DUSP9Q99956 384 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 GTPBP2Q9BX10 602 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 NUSAP1Q9BXS6 441 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 MARK1Q9P0L2 795 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 PILRBQ9UKJ0 227 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 RALYQ9UKM9 306 aaKnown RBP12.16□□□□□ -0.46
USP4-204ENST00000416417 STARD13Q9Y3M8 1113 aa12.16□□□□□ -0.46
USP4-204ENST00000416417 USP3Q9Y6I4 520 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms