RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 UNC13DQ70J99 1090 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 KANSL1Q7Z3B3 1105 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 GALNT7Q86SF2 657 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 PPP1R3BQ86XI6 285 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 LDLRAD3Q86YD5 345 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 EGFL6Q8IUX8 553 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 SLC44A2Q8IWA5 706 aaPredicted RBP4.47□□□□□ -1.69
HMGB1-204ENST00000399489 RHOT1Q8IXI2 618 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 ULK2Q8IYT8 1036 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 TMEM57Q8N5G2 664 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 VGLL2Q8N8G2 317 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 MOSPD2Q8NHP6 518 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 CSGALNACT1Q8TDX6 532 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 SDCCAG3Q96C92 435 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 CALML4Q96GE6 196 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 MRGPRX4Q96LA9 322 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 CRAMP1Q96RY5 1269 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 PIGSQ96S52 555 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 RTKNQ9BST9 563 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 OSBPL6Q9BZF3 934 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 ABHD16BQ9H3Z7 469 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 ERVK-5Q9HDB9 667 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 SARS2Q9NP81 518 aaKnown RBP4.47□□□□□ -1.69
HMGB1-204ENST00000399489 CNNM1Q9NRU3 951 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 LPAR3Q9UBY5 353 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 CHORDC1Q9UHD1 332 aaPredicted RBP4.47□□□□□ -1.69
HMGB1-204ENST00000399489 CLCA2Q9UQC9 943 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 MTO1Q9Y2Z2 717 aaKnown RBP4.47□□□□□ -1.69
HMGB1-204ENST00000399489 USP15Q9Y4E8 981 aaPredicted RBP4.47□□□□□ -1.69
HMGB1-204ENST00000399489 CCDC78A2IDD5 438 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 CNPP09543 421 aaKnown RBP4.46□□□□□ -1.69
HMGB1-204ENST00000399489 KRT10P13645 584 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 NPPBP16860 134 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 EGR1P18146 543 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 FGFR4P22455 802 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 TM4SF1P30408 202 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 HADHAP40939 763 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 AARSP49588 968 aaKnown RBP eCLIP4.46□□□□□ -1.69
HMGB1-204ENST00000399489 CARSP49589 748 aaKnown RBP4.46□□□□□ -1.69
HMGB1-204ENST00000399489 ALDH3A2P51648 485 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 PPP5CP53041 499 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 TPD52P55327 224 aaPredicted RBP4.46□□□□□ -1.69
HMGB1-204ENST00000399489 EVCP57679 992 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 EPS8Q12929 822 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 BAK1Q16611 211 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 KYNUQ16719 465 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 DUSP28Q4G0W2 176 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 KHDC1Q4VXA5 237 aaKnown RBP4.46□□□□□ -1.69
HMGB1-204ENST00000399489 NUP54Q7Z3B4 507 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 ANKS1BQ7Z6G8 1248 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 CPLX4Q7Z7G2 160 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 CLEC14AQ86T13 490 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 SLC9B2Q86UD5 537 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 CCDC117Q8IWD4 279 aaPredicted RBP4.46□□□□□ -1.69
HMGB1-204ENST00000399489 TTC39CQ8N584 583 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 BRIX1Q8TDN6 353 aaKnown RBP4.46□□□□□ -1.69
HMGB1-204ENST00000399489 USP6NLQ92738 828 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 CLPTM1LQ96KA5 538 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 UIMC1Q96RL1 719 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 GPHA2Q96T91 129 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 REEP2Q9BRK0 252 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 TTPALQ9BTX7 342 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 VPS33BQ9H267 617 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 SMURF2Q9HAU4 748 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 TDP1Q9NUW8 608 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 HPF1Q9NWY4 346 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 DNAI1Q9UI46 699 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 ZNF215Q9UL58 517 aaPredicted RBP4.46□□□□□ -1.69
HMGB1-204ENST00000399489 PCDHA1Q9Y5I3 950 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 PSAT1Q9Y617 370 aa4.46□□□□□ -1.69
HMGB1-204ENST00000399489 TSPAN3O60637 253 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 SLC22A3O75751 556 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 TOX4O94842 621 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 PCDH8O95206 1070 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 TUBB4AP04350 444 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 QDPRP09417 244 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 SRGAP2BP0DMP2 458 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 GNAT2P19087 354 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 ADSLP30566 484 aaPredicted RBP4.46□□□□□ -1.7
HMGB1-204ENST00000399489 ARL3P36405 182 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 RAD23AP54725 363 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 NANOS3P60323 173 aaKnown RBP4.46□□□□□ -1.7
HMGB1-204ENST00000399489 ADCY2Q08462 1091 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 TFCP2Q12800 502 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 TARDBPQ13148 414 aaKnown RBP eCLIP4.46□□□□□ -1.7
HMGB1-204ENST00000399489 SLC13A2Q13183 592 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 ACAP1Q15027 740 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 GPR68Q15743 365 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 TBCCQ15814 346 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 ADIPOQQ15848 244 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF674Q2M3X9 581 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 DCLRE1AQ6PJP8 1040 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 DENND5BQ6ZUT9 1274 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 USP49Q70CQ1 688 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 DIS3L2Q8IYB7 885 aaKnown RBP4.46□□□□□ -1.7
HMGB1-204ENST00000399489 THNSL1Q8IYQ7 743 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 LRRC71Q8N4P6 559 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 SPC24Q8NBT2 197 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 Q8NFD4 153 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 OR6B3Q8NGW1 331 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms