RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 C2orf81A6NN90 581 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 FAM58BPP0C7Q3 252 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 ETFBP38117 255 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 HARS2P49590 506 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 ERVK-9P63128 1117 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 FUT11Q495W5 492 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 TAF2Q6P1X5 1199 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 CENPLQ8N0S6 344 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 FAM172AQ8WUF8 416 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 SLC20A1Q8WUM9 679 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 TLR10Q9BXR5 811 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 MTMR12Q9C0I1 747 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 MMADHCQ9H3L0 296 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 LINC00854A0A1B0GVQ3 168 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 E9PBE3 544 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 KLHL41O60662 606 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 RUNDC3AQ59EK9 446 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 SNX30Q5VWJ9 437 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 TAS1R2Q8TE23 839 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 BTBD10Q9BSF8 475 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 CINPQ9BW66 212 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 DCLK3Q9C098 648 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 IARS2Q9NSE4 1012 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 USP18Q9UMW8 372 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 C15orf41Q9Y2V0 281 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 AVPR1AP37288 418 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 C21orf59P57076 290 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 RPL10AP62906 217 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 C2CD6Q53TS8 623 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 FGD2Q7Z6J4 655 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 ELP3Q9H9T3 547 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 RAD54BQ9Y620 910 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 FCHO1O14526 889 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 RGS5O15539 181 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 MAP3K13O43283 966 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 CTSHP09668 335 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 PECAM1P16284 738 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 CYP24A1Q07973 514 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 MPZL3Q6UWV2 235 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 SLFN11Q7Z7L1 901 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 DEFB107AQ8IZN7 70 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 TDRD5Q8NAT2 981 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 SEPT5Q99719 369 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 GANQ9H2C0 597 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 CYP3A43Q9HB55 503 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 GPRC5CQ9NQ84 441 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 GDF3Q9NR23 364 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 CCDC162PA2VCL2 907 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 GUCA1CO95843 209 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 SERPINE1P05121 402 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 EIF2S1P05198 315 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 PRKAA2P54646 552 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 BCAT1P54687 386 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 AKIRIN2Q53H80 203 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 C19orf18Q8NEA5 215 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 VPS33AQ96AX1 596 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 NRDE2Q9H7Z3 1164 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 BIRC5O15392 142 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 FSBPO95073 299 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 GLRBP48167 497 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 TUBA1BP68363 451 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 SCRN3Q0VDG4 424 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 MGAT5BQ3V5L5 792 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 ARMC4Q5T2S8 1044 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 TUBA1AQ71U36 451 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 DDX53Q86TM3 631 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 SLC47A2Q86VL8 602 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 BLOC1S5Q8TDH9 187 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 ATG4CQ96DT6 458 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 TINF2Q9BSI4 451 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 TCF7L2Q9NQB0 619 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 SAR1AQ9NR31 198 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 AP4E1Q9UPM8 1137 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 MAPTP10636 758 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 TCF7P36402 384 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 ANXA11P50995 505 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 PRKAA1Q13131 559 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 CYP51A1Q16850 503 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 ATP6AP1LQ52LC2 224 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 C10orf120Q5SQS8 335 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 TAF8Q7Z7C8 310 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 TTC30AQ86WT1 665 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 ABRAQ8N0Z2 381 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 KCND1Q9NSA2 647 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 CLCA2Q9UQC9 943 aa10.54□□□□□ -0.72
LIMCH1-203ENST00000396595 PRR23AA6NEV1 266 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 IDH3BO43837 385 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 MAP3K6O95382 1288 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 RPL21P46778 160 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 TMEM62Q0P6H9 643 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 WDR49Q8IV35 697 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 SLC22A9Q8IVM8 553 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 KIAA0895Q8NCT3 520 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 BTN2A2Q8WVV5 523 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 PAIP1Q9H074 479 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 SALL3Q9BXA9 1300 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 CD163L1Q9NR16 1453 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 A0A1W2PRG6 482 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 NR5A2O00482 541 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 UBDO15205 165 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms