RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 STKLD1Q8NE28 680 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 SPOCK2Q92563 424 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 FGF13Q92913 245 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 USP13Q92995 863 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 RSPRY1Q96DX4 576 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 TCEAL4Q96EI5 215 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 PGLYRP2Q96PD5 576 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 SLITRK1Q96PX8 696 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 PARVAQ9NVD7 372 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 TRPM5Q9NZQ8 1165 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 A0A1W2PQH9 124 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CHADO15335 359 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 ARHGAP6O43182 974 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 YWHAZP63104 245 aaKnown RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CCDC173Q0VFZ6 552 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CCDC14Q49A88 953 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 ARHGAP15Q53QZ3 475 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 HECTD3Q5T447 861 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 AFMIDQ63HM1 303 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 C1orf228Q6PIY5 440 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 PDZD4Q76G19 769 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 GRASPQ7Z6J2 395 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 GLYCTKQ8IVS8 523 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 UBA3Q8TBC4 463 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 IER2Q9BTL4 223 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 MED10Q9BTT4 135 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 RNF38Q9H0F5 515 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 TJP2Q9UDY2 1190 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 SOAT2O75908 522 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 NDUFA10O95299 355 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 F9P00740 461 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 CALCAP01258 141 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 TPM1P09493 284 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 TNFAIP3P21580 790 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 ZNF394Q53GI3 561 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 FAM78AQ5JUQ0 283 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 BSPRYQ5W0U4 402 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 POLNQ7Z5Q5 900 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 ERICH1Q86X53 443 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 RHOT2Q8IXI1 618 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 LRRC57Q8N9N7 239 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 MICAL1Q8TDZ2 1067 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 FBXO32Q969P5 355 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 PIWIL1Q96J94 861 aaKnown RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 SEPT5Q99719 369 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 OSBPL6Q9BZF3 934 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 DCLK3Q9C098 648 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 DNMT3LQ9UJW3 386 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 DUSP12Q9UNI6 340 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 TRAV19A0A0A6YYK7 116 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 C2CD4DB7Z1M9 353 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 RARGP13631 454 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 GPC5P78333 572 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 ENPP2Q13822 863 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 CYP4A22Q5TCH4 519 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 ALKBH5Q6P6C2 394 aaKnown RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 VITQ6UXI7 678 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 HFE2Q6ZVN8 426 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 RNF10Q8N5U6 811 aaKnown RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 ZSWIM3Q96MP5 696 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 SERPINB11Q96P15 392 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 LRRC3BQ96PB8 259 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 KCNF1Q9H3M0 494 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 RCOR3Q9P2K3 495 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 MIA3Q5JRA6 1907 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 MDM4O15151 490 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 CTNNA2P26232 953 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 VAV2P52735 878 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 PLK1P53350 603 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 ADKP55263 362 aaKnown RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 TEAD2Q15562 447 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 TTC39BQ5VTQ0 682 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 NAA35Q5VZE5 725 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 PTCRAQ6ISU1 281 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 BMP8AQ7Z5Y6 402 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 RBM23Q86U06 439 aaKnown RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 VPS36Q86VN1 386 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 IPO4Q8TEX9 1081 aaKnown RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 CLEC4CQ8WTT0 213 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 OSCP1Q8WVF1 389 aa7.33□□□□□ -1.24
LIMA1-202ENST00000394943 MRPL47Q9HD33 250 aaKnown RBP7.33□□□□□ -1.24
LIMA1-202ENST00000394943 STC2O76061 302 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 PAPSS2O95340 614 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 H2AFZP0C0S5 128 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 RALAP11233 206 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 GABRR2P28476 465 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 NSFP46459 744 aaKnown RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 OGDHQ02218 1023 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 SLC25A11Q02978 314 aaKnown RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 PDGFRLQ15198 375 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 EML3Q32P44 896 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 LLGL2Q6P1M3 1020 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 ZNF783Q6ZMS7 281 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 H2AFVQ71UI9 128 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 ETFBKMTQ8IXQ9 262 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 UBALD2Q8IYN6 164 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 KCNV2Q8TDN2 545 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 DQX1Q8TE96 717 aaKnown RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 GIPC2Q8TF65 315 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 RFFLQ8WZ73 363 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms