RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ARL14EPQ8N8R7 260 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 TRIM43Q96BQ3 446 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 KATNBL1Q9H079 304 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 AJAP1Q9UKB5 411 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 NAALADL1Q9UQQ1 740 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 A0A1W2PQJ5 194 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 TBC1D3BA6NDS4 549 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 ATF2P15336 505 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 SLC11A2P49281 568 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 TBX4P57082 545 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 B3GNT9Q6UX72 402 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 NT5DC4Q86YG4 428 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CCDC13Q8IYE1 715 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CACNA2D3Q8IZS8 1091 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 TMEM86AQ8N2M4 240 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CLEC4CQ8WTT0 213 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CYP2S1Q96SQ9 504 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 EDEM3Q9BZQ6 932 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 IQCGQ9H095 443 aaKnown RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 MFSD1Q9H3U5 465 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 SLC40A1Q9NP59 571 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 GMIPQ9P107 970 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CDH9Q9ULB4 789 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 OGDHLQ9ULD0 1010 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 PLAAQ9Y263 795 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 ECM29Q5VYK3 1845 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CNOT1A5YKK6 2376 aaKnown RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 MBLAC1A4D2B0 266 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 C9IYK1 514 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 HGSO14964 777 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 ATP9BO43861 1147 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 TNFRSF8P28908 595 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 ATAT1Q5SQI0 421 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 PMF1Q6P1K2 205 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 DEPDC1BQ8WUY9 529 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CPXM1Q96SM3 734 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 MAF1Q9H063 256 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 GKN1Q9NS71 199 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 SAMD15Q9P1V8 674 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 WDR35Q9P2L0 1181 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 EVPLQ92817 2033 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 SSU72P8A0A1W2PR75 194 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 PITPNM1O00562 1244 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 RARGP13631 454 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 FNTAP49354 379 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 WDR5P61964 334 aaKnown RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 RAP1GAP2Q684P5 730 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 TXNDC8Q6A555 127 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 HEATR6Q6AI08 1181 aaKnown RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 FSD1LQ9BXM9 530 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 TKTL2Q9H0I9 626 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 SMYD2Q9NRG4 433 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 STXBP5LQ9Y2K9 1186 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 GMNCA6NCL1 334 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 POC1B-GALNT4F8VUJ3 575 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 H3BRJ5 948 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 KCNN4O15554 427 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 TJP3O95049 919 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 CHRM1P11229 460 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 IGFBP6P24592 240 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 ATP5C1P36542 298 aaKnown RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 SESN2P58004 480 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 FIGNQ5HY92 759 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 FAM183BPQ6ZVS7 135 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 GRASPQ7Z6J2 395 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 PARP9Q8IXQ6 854 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 LGI2Q8N0V4 545 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 DCLK2Q8N568 766 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 ATP11CQ8NB49 1132 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 MORC4Q8TE76 937 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 SIX4Q9UIU6 781 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 CUL9Q8IWT3 2517 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 IGKV6-21A0A0C4DH24 114 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 F5H5T6 163 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 KCNK1O00180 336 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 PTGESO14684 152 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 PMPCBO75439 489 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 STBD1O95210 358 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 TRUB2O95900 331 aaKnown RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 SLC8A1P32418 973 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 SLC5A3P53794 718 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 ZNF177Q13360 481 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-205ENST00000392004 TFDP2Q14188 446 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 CLLU1OSQ5K130 101 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 SCARA3Q6AZY7 606 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 CCDC149Q6ZUS6 474 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 MCOLN2Q8IZK6 566 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 NUP93Q8N1F7 819 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 SLC25A41Q8N5S1 370 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 GSDMBQ8TAX9 411 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 SPATA18Q8TC71 538 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 SHC3Q92529 594 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 TIFAQ96CG3 184 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 FAF2Q96CS3 445 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 ASIC4Q96FT7 647 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 FBXO44Q9H4M3 255 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 AMACRQ9UHK6 382 aa10.69□□□□□ -0.7
COL6A3-205ENST00000392004 KIAA1257Q9ULG3 409 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms