RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PLEKHA5Q9HAU0 1116 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 RXFP1Q9HBX9 757 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 BAIAP2L1Q9UHR4 511 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 RABGEF1Q9UJ41 708 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 CHMP2BQ9UQN3 213 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 HEY1Q9Y5J3 304 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 SPO11Q9Y5K1 396 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 IQANK1A0A1B0GTG1 560 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 RRN3P2A6NIE6 340 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 LSM1O15116 133 aaKnown RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 KRT38O76015 456 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 ASMTLO95671 621 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 INHBAP08476 426 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 CYP2C9P11712 490 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 KRT4P19013 534 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 FYB2Q5VWT5 728 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 SDCCAG8Q86SQ7 713 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 VSIG1Q86XK7 387 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 LINC01465Q8N7H1 131 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 NSMCE1Q8WV22 266 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 TBCBQ99426 244 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 PTPN18Q99952 460 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 FRMD8Q9BZ67 464 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 FAM49BQ9NUQ9 324 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 UTP6Q9NYH9 597 aaKnown RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 ABT1Q9ULW3 272 aaKnown RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 DERAQ9Y315 318 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 MANSC4A6NHS7 340 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 A6NJR5 290 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 KCNN4O15554 427 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 SPAG6O75602 509 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 GCAP28676 217 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 FOXN2P32314 431 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 RPA3P35244 121 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 GPX6P59796 221 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 SLC6A3Q01959 620 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 GRB14Q14449 540 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 RNF43Q68DV7 783 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 NPNTQ6UXI9 565 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 C7orf31Q8N865 590 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 C12orf29Q8N999 325 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 FAM172AQ8WUF8 416 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 SLC7A5P2Q9GIP4 190 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 KLC2Q9H0B6 622 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 RAB6BQ9NRW1 208 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 PHTF1Q9UMS5 762 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 STARD13Q9Y3M8 1113 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 SBF1O95248 1867 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 CLUHO75153 1309 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 MMP3P08254 477 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 TGM2P21980 687 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 SLC8A1P32418 973 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 DEUP1Q05D60 604 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 MAP2K5Q13163 448 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 PDK4Q16654 411 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 PPP6R3Q5H9R7 873 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 SLC27A1Q6PCB7 646 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 LVRNQ6Q4G3 990 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 NPLOC4Q8TAT6 608 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 EMID1Q96A84 441 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 PEBP4Q96S96 227 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 C16orf70Q9BSU1 422 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 PREBQ9HCU5 417 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 PCMTD2Q9NV79 361 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 SNTG2Q9NY99 539 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 USH1CQ9Y6N9 552 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 A0A1W2PPM1 405 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 A8MXQ7 604 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 E7ESA3 106 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 XPOTO43592 962 aaKnown RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 TMEM63AO94886 807 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 TROVE2P10155 538 aaKnown RBP eCLIP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 ALOX15P16050 662 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 ELK3P41970 407 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 ELF3P78545 371 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 ZNF200P98182 395 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 GAD2Q05329 585 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 MTM1Q13496 603 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 PPP1R26Q5T8A7 1209 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 SH3PXD2AQ5TCZ1 1133 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 NOTUMQ6P988 496 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 TEKT4Q8WW24 435 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 STAMBPL1Q96FJ0 436 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 SSU72Q9NP77 194 aaKnown RBP10.01□□□□□ -0.81
COL6A3-204ENST00000392003 GPATCH2LQ9NWQ4 482 aa10.01□□□□□ -0.81
COL6A3-204ENST00000392003 ANK1P16157 1881 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 CHADO15335 359 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 DCTN3O75935 186 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 ROR2Q01974 943 aaKnown RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 BTG3Q14201 252 aaPredicted RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 MSS51Q4VC12 460 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 LGSNQ5TDP6 509 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 ADGRD1Q6QNK2 874 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 TLK2Q86UE8 772 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 ZDHHC17Q8IUH5 632 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 CDKL3Q8IVW4 592 aaPredicted RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 CTAGE3PQ8IX95 158 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 TMCO5AQ8N6Q1 288 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 OSMRQ99650 979 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms