RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 TEKT5Q96M29 485 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 GOLPH3Q9H4A6 298 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 RPS6KB2Q9UBS0 482 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 GLS2Q9UI32 602 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 GTF3C4Q9UKN8 822 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PMF1-BGLAPU3KQ54 211 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 CLCA1A8K7I4 914 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 I3L521 148 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 IFRD1O00458 451 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 ZBTB7BO15156 539 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 TRIM3O75382 744 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 GDF11O95390 407 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 CD2P06729 351 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PRG2P13727 222 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 MLLT6P55198 1093 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 CHRNDQ07001 517 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 TAF5Q15542 800 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 CNSTQ6PJW8 725 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 WDR49Q8IV35 697 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 ACTRT2Q8TDY3 377 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 TNFAIP8L1Q8WVP5 186 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 HTRA1Q92743 480 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 ASIC4Q96FT7 647 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 SENP7Q9BQF6 1050 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 SLC39A3Q9BRY0 314 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 NAT9Q9BTE0 207 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 GTPBP2Q9BX10 602 aaKnown RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 MEMO1Q9Y316 297 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PLEKHG3A1L390 1219 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 NFICP08651 508 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 WEE2P0C1S8 567 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 LCP1P13796 627 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 KIZQ2M2Z5 673 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 EGFLAMQ63HQ2 1017 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 STARD8Q92502 1023 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 ATXN7L3BQ96GX2 97 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 RNF38Q9H0F5 515 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 RPF1Q9H9Y2 349 aaKnown RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 M0R036 132 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 TFECO14948 347 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 HNF4AP41235 474 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 ELF3P78545 371 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 FUT11Q495W5 492 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 ARHGAP15Q53QZ3 475 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 UBXN11Q5T124 520 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 C10orf53Q8N6V4 93 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 XAGE3Q8WTP9 111 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 SMAD5Q99717 465 aaKnown RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 MAGEE1Q9HCI5 957 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 SPASTQ9UBP0 616 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PRODHO43272 600 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PRKD3O94806 890 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 MYBL2P10244 700 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 CD79BP40259 229 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 OMPP47874 163 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PFKFB3Q16875 520 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 RFX4Q33E94 735 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PALB2Q86YC2 1186 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 HERC2P3Q9BVR0 1158 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 TMEM120AQ9BXJ8 343 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 HPS4Q9NQG7 708 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 BABAM1Q9NWV8 329 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 ZNF532Q9HCE3 1301 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 TRMUO75648 421 aaKnown RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 FTLP02792 175 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 GNAO1P09471 354 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PTX3P26022 381 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 DPYSQ14117 519 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 KCNA10Q16322 511 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 NLRP10Q86W26 655 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 WRNIP1Q96S55 665 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 DDX50Q9BQ39 737 aaKnown RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 LATS2Q9NRM7 1088 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 VPS45Q9NRW7 570 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 SPATA7Q9P0W8 599 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 FBXO40Q9UH90 709 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 RTCBQ9Y3I0 505 aaKnown RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 FHOD1Q9Y613 1164 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 AP3D1O14617 1153 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 SUPT7LO94864 414 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PDHA2P29803 388 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PIK3CGP48736 1102 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 GNG2P59768 71 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 IDI1Q13907 227 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 UNC13DQ70J99 1090 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 R3HCC1LQ7Z5L2 792 aaKnown RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 SLCO6A1Q86UG4 719 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 ANKMY2Q8IV38 441 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PPIL6Q8IXY8 311 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 TAMM41Q96BW9 452 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 EXOC2Q96KP1 924 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 TBATAQ96M53 351 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 ZNF717Q9BY31 904 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 SPACA6W5XKT8 324 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 MROH5Q6ZUA9 1318 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 SMARCA4P51532 1647 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 PPEF2O14830 753 aa8.96□□□□□ -0.97
LIG3-202ENST00000378526 SSX5O60225 188 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms